Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400034844 Solanum tuberosum HOM05D014983 ORTHO05D014445 3.1e-51 204.9 107 100.0
PGSC0003DMG400041979 Solanum tuberosum HOM05D014983 ORTHO05D014445 3.1e-51 204.9 107 100.0
PGSC0003DMG400046316 Solanum tuberosum HOM05D014983 ORTHO05D014445 3.1e-51 204.9 107 100.0
PGSC0003DMG400043095 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.2e-50 203.0 107 99.1
PGSC0003DMG400043823 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.5e-50 202.6 107 99.1
PGSC0003DMG400040405 Solanum tuberosum HOM05D014983 ORTHO05D014445 2.9e-49 198.4 107 96.3
PGSC0003DMG400035227 Solanum tuberosum HOM05D014983 ORTHO05D014445 3.7e-49 198.0 107 97.2
PGSC0003DMG400035826 Solanum tuberosum HOM05D014983 ORTHO05D014445 4.9e-49 197.6 107 97.2
PGSC0003DMG400042121 Solanum tuberosum HOM05D014983 ORTHO05D014445 2.4e-48 195.3 107 96.3
PGSC0003DMG400041171 Solanum tuberosum HOM05D014983 ORTHO05D014445 2.3e-46 188.7 107 92.5
Nitab4.5_0012488g0010 Nicotiana tabacum HOM05D000344 ORTHO05D000934 4.6e-31 137.9 108 73.1
Nitab4.5_0000131g0390 Nicotiana tabacum HOM05D000344 ORTHO05D000934 6.2e-28 127.5 87 82.8
CAN.G475.43 Capsicum annuum HOM05D000344 ORTHO05D000934 3.1e-27 125.2 97 75.3
Sopen00g005850 Solanum pennellii HOM05D000344 ORTHO05D000934 3.8e-25 118.2 67 94.0
Sopen04g029990 Solanum pennellii HOM05D000344 ORTHO05D014445 3.8e-25 118.2 67 94.0
Cc10_g15790 Coffea canephora HOM05D000344 ORTHO05D000934 2.9e-17 92.0 79 63.3
Dinv42624 Davidia involucrata HOM05D000344 ORTHO05D000934 3.9e-14 81.6 66 68.2
Dinv44850 Davidia involucrata HOM05D000344 ORTHO05D000934 3.9e-14 81.6 66 71.2
Actinidia19637 Actinidia chinensis HOM05D000344 ORTHO05D000934 1.3e-12 76.6 69 65.2
Actinidia29620 Actinidia chinensis HOM05D000344 ORTHO05D000934 2.1e-12 75.9 69 65.2
Hma1.2p1_0125F.1_g058980 Hydrangea macrophylla HOM05D000344 ORTHO05D000934 2.1e-12 75.9 66 65.2
TAR376G0948 Trochodendron aralioides HOM05D000344 ORTHO05D000934 2.1e-12 75.9 67 67.2
CANSAT25G0490 Cannabis sativa HOM05D000344 ORTHO05D000934 2.8e-12 75.5 68 60.3
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 6.2e-12 74.3 63 65.1
Duzib093G0972 Durio zibethinus HOM05D000344 ORTHO05D000934 1.4e-11 73.2 67 61.2
Manes.02G145700 Manihot esculenta HOM05D000344 ORTHO05D000934 2.4e-11 72.4 67 64.2
Duzib041G0213 Durio zibethinus HOM05D000344 ORTHO05D000934 3.1e-11 72.0 67 59.7
Oeu049763.1 Olea europaea HOM05D000344 ORTHO05D000934 4.0e-11 71.6 104 42.3
Potri.005G156900 Populus trichocarpa HOM05D000344 ORTHO05D000934 4.0e-11 71.6 67 61.2
Rhsim06G0072600 Rhododendron simsii HOM05D000344 ORTHO05D000934 5.3e-11 71.2 63 60.3
EL10Ac1g01066 Beta vulgaris HOM05D000344 ORTHO05D000934 9.0e-11 70.5 68 61.8
COL.COLO4_35217 Corchorus olitorius HOM05D000344 ORTHO05D000934 9.0e-11 70.5 67 62.7
Cpa.g.sc21.3 Carica papaya HOM05D000344 ORTHO05D000934 1.2e-10 70.1 77 57.1
Glyma.04G091700 Glycine max HOM05D000344 ORTHO05D000934 1.2e-10 70.1 67 62.7
Gohir.D06G032100 Gossypium hirsutum HOM05D000344 ORTHO05D000934 1.2e-10 70.1 67 59.7
Oeu061180.3 Olea europaea HOM05D000344 ORTHO05D000934 1.2e-10 70.1 63 57.1
Gohir.A06G032616 Gossypium hirsutum HOM05D000344 ORTHO05D000934 1.5e-10 69.7 67 59.7
Gorai.010G035400 Gossypium raimondii HOM05D000344 ORTHO05D000934 1.5e-10 69.7 67 59.7
Gohir.D02G085800 Gossypium hirsutum HOM05D000344 ORTHO05D000934 2.0e-10 69.3 67 61.2
Gorai.005G096600 Gossypium raimondii HOM05D000344 ORTHO05D000934 2.0e-10 69.3 67 61.2
Hund16862 Selenicereus undatus HOM05D000344 ORTHO05D000934 2.0e-10 69.3 66 62.1
Sabra02G0082300 Salix brachista HOM05D000344 ORTHO05D000934 2.6e-10 68.9 85 51.8
Gohir.A02G078600 Gossypium hirsutum HOM05D000344 ORTHO05D000934 3.4e-10 68.6 67 61.2
Atru.chr13.1030 Acer truncatum HOM05D000344 ORTHO05D000934 4.5e-10 68.2 85 52.9
Actinidia10378 Actinidia chinensis HOM05D000344 ORTHO05D000934 4.5e-10 68.2 63 61.9
Actinidia30822 Actinidia chinensis HOM05D000344 ORTHO05D000934 5.8e-10 67.8 63 65.1
MD08G1196200 Malus domestica HOM05D000344 ORTHO05D000934 5.8e-10 67.8 68 60.3
Nn1g05539 Nelumbo nucifera HOM05D000344 ORTHO05D000934 5.8e-10 67.8 67 55.2
Potri.002G104800 Populus trichocarpa HOM05D000344 ORTHO05D000934 5.8e-10 67.8 66 60.6
Sabra05G0120400 Salix brachista HOM05D000344 ORTHO05D000934 5.8e-10 67.8 67 59.7
CSS0024089 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 7.6e-10 67.4 63 63.5
Ca_15995_v3 Cicer arietinum L. HOM05D000344 ORTHO05D000934 7.6e-10 67.4 78 52.6
Ciclev10000079m.g Citrus clementina HOM05D000344 ORTHO05D000934 1.3e-09 66.6 68 58.8
Thecc.08G069400 Theobroma cacao HOM05D000344 ORTHO05D000934 1.3e-09 66.6 67 58.2
TPR.G26069 Trifolium pratense HOM05D000344 ORTHO05D000934 1.3e-09 66.6 63 57.1
GSVIVG01009158001 Vitis vinifera HOM05D000344 ORTHO05D000934 1.3e-09 66.6 63 58.7
CiPaw.07G166700 Carya illinoinensis HOM05D000344 ORTHO05D000934 1.7e-09 66.2 62 56.5
Duzib116G0675 Durio zibethinus HOM05D000344 ORTHO05D000934 1.7e-09 66.2 67 58.2
TAR625G1132 Trochodendron aralioides HOM05D000344 ORTHO05D000934 1.7e-09 66.2 67 56.7
Lsat_1_v5_gn_9_76000 Lactuca sativa HOM05D000344 ORTHO05D000934 2.2e-09 65.9 66 54.5
Ah.05g170780 Amaranthus hybridus HOM05D000344 ORTHO05D000934 2.9e-09 65.5 78 50.0
ClCG08G011730 Citrullus lanatus HOM05D000344 ORTHO05D000934 2.9e-09 65.5 68 58.8
Manes.18G059900 Manihot esculenta HOM05D000344 ORTHO05D000934 2.9e-09 65.5 78 56.4
Medtr5g066000 Medicago truncatula HOM05D000344 ORTHO05D000934 3.8e-09 65.1 68 52.9
MELO3C011097.2 Cucumis melo HOM05D000344 ORTHO05D000934 4.9e-09 64.7 63 61.9
Lalb_Chr08g0242461 Lupinus albus HOM05D000344 ORTHO05D000934 4.9e-09 64.7 68 51.5
TPR.G16004 Trifolium pratense HOM05D000344 ORTHO05D000934 4.9e-09 64.7 68 54.4
Lj4C735T7 Lonicera japonica HOM05D000344 ORTHO05D000934 6.5e-09 64.3 82 50.0
LjContig00408g0026735 Lotus japonicus HOM05D000344 ORTHO05D000934 6.5e-09 64.3 67 53.7
Aqoxy5G01314 Aquilegia oxysepala HOM05D000344 ORTHO05D000934 8.4e-09 63.9 70 45.7
Hund27014 Selenicereus undatus HOM05D000344 ORTHO05D000934 8.4e-09 63.9 70 57.1
TWI56G1435 Tripterygium wilfordii HOM05D000344 ORTHO05D000934 8.4e-09 63.9 67 56.7
AUR62027875 Chenopodium quinoa HOM05D000344 ORTHO05D000934 1.1e-08 63.5 72 58.3
Lj1g0002541 Lotus japonicus HOM05D000344 ORTHO05D000934 1.1e-08 63.5 67 58.2
Cfa013689 Carpinus fangiana HOM05D000344 ORTHO05D000934 1.4e-08 63.2 60 58.3
Prupe.1G530100 Prunus persica HOM05D000344 ORTHO05D000934 1.4e-08 63.2 67 58.2
CSS0017298 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 1.9e-08 62.8 69 58.0
CSS0032567 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 1.9e-08 62.8 69 58.0
MD15G1384000 Malus domestica HOM05D000344 ORTHO05D000934 1.9e-08 62.8 67 53.7
Medtr3g100480 Medicago truncatula HOM05D000344 ORTHO05D000934 1.9e-08 62.8 67 53.7
BcaNung04965 Brassica carinata HOM05D000344 ORTHO05D000934 2.5e-08 62.4 68 54.4
Aa31LG4G9660 Aethionema arabicum HOM05D000344 ORTHO05D000934 3.2e-08 62.0 77 50.6
Glyma.06G093500 Glycine max HOM05D000344 ORTHO05D000934 3.2e-08 62.0 67 52.2
Ca_05424_v3 Cicer arietinum L. HOM05D000344 ORTHO05D000934 4.2e-08 61.6 63 55.6
Haze_22330 Corylus avellana HOM05D000344 ORTHO05D000934 4.2e-08 61.6 60 56.7
DCAR_012860 Daucus carota HOM05D000344 ORTHO05D000934 4.2e-08 61.6 67 55.2
Lalb_Chr04g0252901 Lupinus albus HOM05D000344 ORTHO05D000934 4.2e-08 61.6 67 58.2
TWI12G0547 Tripterygium wilfordii HOM05D000344 ORTHO05D000934 4.2e-08 61.6 67 56.7
arahy.Tifrunner.gnm1.ann1.14BCP7 Arachis hypogaea HOM05D000344 ORTHO05D014445 5.5e-08 61.2 66 51.5
arahy.Tifrunner.gnm1.ann1.V86AIC Arachis hypogaea HOM05D000344 ORTHO05D000934 5.5e-08 61.2 66 51.5
BcaC09g50853 Brassica carinata HOM05D000344 ORTHO05D000934 5.5e-08 61.2 68 50.0
A01p15920 Brassica napus HOM05D000344 ORTHO05D000934 5.5e-08 61.2 68 50.0
C01p19890 Brassica napus HOM05D000344 ORTHO05D000934 5.5e-08 61.2 68 50.0
BolC1t01917H Brassica oleracea HOM05D000344 ORTHO05D000934 5.5e-08 61.2 68 50.0
Psat2g066240 Pisum sativum HOM05D000344 ORTHO05D000934 5.5e-08 61.2 69 58.0
QL09p017563 Quercus lobata HOM05D000344 ORTHO05D000934 5.5e-08 61.2 61 57.4
BraA01t01526Z Brassica rapa HOM05D000344 ORTHO05D000934 7.1e-08 60.8 68 50.0
CiPaw.08G054800 Carya illinoinensis HOM05D000344 ORTHO05D000934 7.1e-08 60.8 73 53.4
BcaC06g32875 Brassica carinata HOM05D000344 ORTHO05D000934 9.3e-08 60.5 78 51.3
CsaV3_2G030350 Cucumis sativus L. HOM05D000344 ORTHO05D000934 9.3e-08 60.5 63 57.1
Hund11611 Selenicereus undatus HOM05D006468 ORTHO05D006908 9.3e-08 60.5 67 59.7
TAR628G1265 Trochodendron aralioides HOM05D000344 ORTHO05D000934 9.3e-08 60.5 67 55.2
vmacro04658 Vaccinium macrocarpon HOM05D000344 ORTHO05D000934 9.3e-08 60.5 66 53.0
THA.LOC104799803 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 1.2e-07 60.1 77 49.4
Eucgr.F00414 Eucalyptus grandis HOM05D000344 ORTHO05D000934 1.6e-07 59.7 77 50.6
Sed0001827 Sechium edule HOM05D000344 ORTHO05D000934 1.6e-07 59.7 66 60.6
arahy.Tifrunner.gnm1.ann1.YU5GZ6 Arachis hypogaea HOM05D000344 ORTHO05D000934 2.1e-07 59.3 68 52.9
AUR62019038 Chenopodium quinoa HOM05D000344 ORTHO05D000934 2.1e-07 59.3 72 56.9
Lalb_Chr17g0344471 Lupinus albus HOM05D000344 ORTHO05D000934 2.1e-07 59.3 66 56.1
arahy.Tifrunner.gnm1.ann1.6IR4P8 Arachis hypogaea HOM05D000344 ORTHO05D000934 2.7e-07 58.9 68 52.9
Psat5g046280 Pisum sativum HOM05D000344 ORTHO05D000934 2.7e-07 58.9 62 58.1
ClCG11G014530 Citrullus lanatus HOM05D000344 ORTHO05D000934 3.5e-07 58.5 66 53.0
Lalb_Chr10g0102701 Lupinus albus HOM05D000344 ORTHO05D000934 6.0e-07 57.8 66 54.5
Nn5g29911 Nelumbo nucifera HOM05D000344 ORTHO05D000934 6.0e-07 57.8 46 58.7
PGR031G2385 Punica granatum HOM05D000344 ORTHO05D000934 6.0e-07 57.8 62 56.5
Sed0015689 Sechium edule HOM05D000344 ORTHO05D000934 6.0e-07 57.8 62 56.5
Sc01g0001120 Simmondsia chinensis HOM05D000344 ORTHO05D000934 6.0e-07 57.8 68 51.5
Aqoxy6G01449 Aquilegia oxysepala HOM05D000344 ORTHO05D000934 7.9e-07 57.4 66 50.0
PGR042G3569 Punica granatum HOM05D000344 ORTHO05D000934 7.9e-07 57.4 62 54.8
THA.LOC104803423 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 7.9e-07 57.4 66 53.0
CsaV3_3G047940 Cucumis sativus L. HOM05D000344 ORTHO05D000934 1.0e-06 57.0 66 50.0
Migut.N02870 Erythranthe guttata HOM05D000344 ORTHO05D000934 1.0e-06 57.0 66 54.5
HanXRQChr04g0111421 Helianthus annuus HOM05D000344 ORTHO05D000934 1.0e-06 57.0 50 56.0
CARHR231960 Cardamine hirsuta HOM05D000344 ORTHO05D000934 1.3e-06 56.6 66 48.5
RcHm_v2.0_Chr7g0236881 Rosa chinensis HOM05D000344 ORTHO05D000934 1.3e-06 56.6 70 55.7
Sp7g22560 Schrenkiella parvula HOM05D000344 ORTHO05D000934 1.3e-06 56.6 66 51.5
Sed0005755 Sechium edule HOM05D000344 ORTHO05D000934 1.3e-06 56.6 78 44.9
FAN04G1494 Fragaria x ananassa HOM05D000344 ORTHO05D000934 2.3e-06 55.8 70 55.7
FAN13G0381 Fragaria x ananassa HOM05D000344 ORTHO05D000934 2.3e-06 55.8 70 55.7
ATR0022G050 Amborella trichopoda HOM05D000344 ORTHO05D000934 3.9e-06 55.1 61 47.5
AT4G24560 Arabidopsis thaliana HOM05D000344 ORTHO05D000934 3.9e-06 55.1 66 51.5
Eucgr.F02136 Eucalyptus grandis HOM05D000344 ORTHO05D000934 3.9e-06 55.1 67 52.2
Thhalv10024307m.g Eutrema salsugineum HOM05D000344 ORTHO05D000934 5.1e-06 54.7 66 51.5
PSO541G1382 Papaver somniferum HOM05D000344 ORTHO05D000934 5.1e-06 54.7 67 49.3
Phvul.009G144200 Phaseolus vulgaris HOM05D000344 ORTHO05D000934 6.7e-06 54.3 67 50.7


User provided reference genes

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