Gene: AT4G24560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G24560
  • Transcript Identifier AT4G24560.1
  • Gene Type Coding gene
  • Location Chr4 : 12679493-12684528 : negative

Gene Family Information

  • ID HOM05D000344
  • #Genes/#Species 1371/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G24560.1
  • symbol UBP16
  • uniprot Q9SB51

Descriptions

  • Description ubiquitin-specific protease 16
  • Computational description ubiquitin-specific protease 16 (UBP16); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: cell proliferation, flower development, shoot development, root development, leaf development; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 17 (TAIR:AT5G65450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IEA
GOA Databaseprotein deubiquitination
GO:0016579
IDA
IBA
Gene Ontologyprotein deubiquitination1 2
GO:0016579
IEA
InterProprotein deubiquitination
GO:0006508
IEA
GOA Databaseproteolysis
GO:1901000
IMP
Gene Ontologyregulation of response to salt stress2
GO:0009651
IEP
Gene Ontologyresponse to salt stress2
GO:0051301
IGI
Gene Ontologycell division3
GO:0048367
IGI
Gene Ontologyshoot system development3
GO:0048366
IGI
Gene Ontologyleaf development3
GO:0048364
IGI
Gene Ontologyroot development3
GO:0009908
IGI
Gene Ontologyflower development3
GO:0006511
IEA
Gene Ontologyubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004843
IEA
GOA Databasethiol-dependent deubiquitinase
GO:0004843
IDA
IBA
Gene Ontologythiol-dependent deubiquitinase1 2
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004197
IBA
Gene Ontologycysteine-type endopeptidase activity1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IBA
Gene Ontologycytosol1
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005634
IBA
Gene Ontologynucleus1
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038765 Papain-like cysteine peptidase superfamily
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR002893 Zinc finger, MYND-type
Mapman id Description
19.2.3.1.1.6 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.UBP deubiquitinase activities.deubiquitinase (UBP15-21)