Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400041867 Solanum tuberosum HOM05D008903 ORTHO05D019318 1.3e-85 319.7 158 100.0
PGSC0003DMG400041430 Solanum tuberosum HOM05D008903 ORTHO05D019318 6.1e-40 167.9 91 91.2
PGSC0003DMG400039045 Solanum tuberosum HOM05D008903 ORTHO05D019318 5.4e-36 154.8 87 88.5
PGSC0003DMG400039371 Solanum tuberosum HOM05D008903 ORTHO05D019318 1.5e-33 146.7 91 84.6
Nitab4.5_0000257g0010 Nicotiana tabacum HOM05D008903 ORTHO05D011660 6.4e-21 104.8 96 57.3
Nitab4.5_0000257g0070 Nicotiana tabacum HOM05D008903 ORTHO05D019318 1.2e-19 100.5 83 61.4
Nitab4.5_0000257g0020 Nicotiana tabacum HOM05D008903 ORTHO05D011660 6.0e-19 98.2 96 55.2
Peaxi162Scf01141g00008 Petunia axillaris HOM05D000502 ORTHO05D000356 1.3e-18 97.1 100 54.0
PGSC0003DMG401016557 Solanum tuberosum HOM05D008903 ORTHO05D011660 5.0e-18 95.1 98 54.1
PGSC0003DMG400029236 Solanum tuberosum HOM05D000502 ORTHO05D000356 8.6e-18 94.4 45 95.6
PGSC0003DMG400041373 Solanum tuberosum HOM05D000502 ORTHO05D000356 8.6e-18 94.4 45 95.6
PGSC0003DMG400046081 Solanum tuberosum HOM05D000502 ORTHO05D000356 1.9e-17 93.2 46 93.5
Solyc05g006360.2 Solanum lycopersicum HOM05D000502 ORTHO05D000356 3.3e-17 92.4 46 89.1
Solyc04g051885.1 Solanum lycopersicum HOM05D008903 ORTHO05D011660 7.3e-17 91.3 90 54.4
Peaxi162Scf01141g00035 Petunia axillaris HOM05D008903 ORTHO05D011660 3.6e-16 89.0 105 50.5
PGSC0003DMG400046023 Solanum tuberosum HOM05D000502 ORTHO05D000356 8.1e-16 87.8 45 88.9
Peaxi162Scf00828g00022 Petunia axillaris HOM05D008903 ORTHO05D011660 1.1e-15 87.4 99 51.5
PGSC0003DMG400046359 Solanum tuberosum HOM05D000502 ORTHO05D000356 1.4e-15 87.0 50 82.0
Nitab4.5_0002059g0060 Nicotiana tabacum HOM05D008903 ORTHO05D011660 2.3e-15 86.3 97 55.7
PGSC0003DMG400044936 Solanum tuberosum HOM05D008903 ORTHO05D019318 5.2e-15 85.1 77 55.8
Nitab4.5_0004310g0030 Nicotiana tabacum HOM05D008903 ORTHO05D011660 4.4e-14 82.0 98 53.1
Nitab4.5_0000257g0040 Nicotiana tabacum HOM05D000502 ORTHO05D000356 1.7e-13 80.1 51 76.5
Nitab4.5_0002059g0040 Nicotiana tabacum HOM05D008903 ORTHO05D011660 4.9e-13 78.6 96 50.0
Nitab4.5_0002059g0010 Nicotiana tabacum HOM05D000502 ORTHO05D000356 6.4e-13 78.2 50 76.0
Solyc05g006290.2 Solanum lycopersicum HOM05D008903 ORTHO05D011660 6.4e-13 78.2 96 45.8
Oeu039495.1 Olea europaea HOM05D000502 ORTHO05D000356 8.6e-10 67.8 79 46.8
Solyc04g005040.1 Solanum lycopersicum HOM05D000502 ORTHO05D000356 8.6e-10 67.8 59 61.0
Sopen04g001060 Solanum pennellii HOM05D000502 ORTHO05D000356 8.6e-10 67.8 59 61.0
Migut.L01389 Erythranthe guttata HOM05D000502 ORTHO05D000356 1.5e-09 67.0 56 60.7
Peaxi162Scf00408g00319 Petunia axillaris HOM05D008903 ORTHO05D011660 1.5e-09 67.0 90 51.1
AL1G37950 Arabidopsis lyrata HOM05D000502 ORTHO05D000356 1.9e-09 66.6 57 59.6
PGSC0003DMG400001924 Solanum tuberosum HOM05D000502 ORTHO05D000356 1.9e-09 66.6 59 59.3
Migut.E00135 Erythranthe guttata HOM05D000502 ORTHO05D000356 2.5e-09 66.2 52 63.5
Solyc04g005050.1 Solanum lycopersicum HOM05D000502 ORTHO05D000356 2.5e-09 66.2 59 57.6
Sopen04g001070 Solanum pennellii HOM05D000502 ORTHO05D000356 2.5e-09 66.2 59 57.6
PGSC0003DMG400001923 Solanum tuberosum HOM05D000502 ORTHO05D000356 2.5e-09 66.2 59 57.6
AT1G24140 Arabidopsis thaliana HOM05D000502 ORTHO05D000356 3.3e-09 65.9 57 59.6
CAN.G58.25 Capsicum annuum HOM05D000502 ORTHO05D000356 3.3e-09 65.9 59 57.6
Peaxi162Scf00134g00172 Petunia axillaris HOM05D000502 ORTHO05D000356 3.3e-09 65.9 59 57.6
Nitab4.5_0003786g0020 Nicotiana tabacum HOM05D000502 ORTHO05D000356 5.6e-09 65.1 59 57.6
vmacro22657 Vaccinium macrocarpon HOM05D000502 ORTHO05D000356 5.6e-09 65.1 49 63.3
BcaC05g26313 Brassica carinata HOM05D000502 ORTHO05D000356 7.3e-09 64.7 57 61.4
C05p23260 Brassica napus HOM05D000502 ORTHO05D000356 7.3e-09 64.7 57 61.4
BolC5t31026H Brassica oleracea HOM05D000502 ORTHO05D000356 7.3e-09 64.7 57 61.4
MD16G1085000 Malus domestica HOM05D000502 ORTHO05D000356 9.5e-09 64.3 52 61.5
TWI75G0054 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 9.5e-09 64.3 49 63.3
TWI75G1323 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 9.5e-09 64.3 49 63.3
TWI75G1727 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 9.5e-09 64.3 49 63.3
TAR629G2860 Trochodendron aralioides HOM05D000502 ORTHO05D000356 9.5e-09 64.3 78 47.4
MSTRG.633 Avicennia marina HOM05D000502 ORTHO05D000356 1.2e-08 63.9 52 59.6
CAN.G21.23 Capsicum annuum HOM05D000502 ORTHO05D000356 1.2e-08 63.9 59 55.9
Rhsim12G0125800 Rhododendron simsii HOM05D000502 ORTHO05D000356 1.2e-08 63.9 52 59.6
Dinv24913 Davidia involucrata HOM05D000502 ORTHO05D000356 1.6e-08 63.5 51 60.8
Nitab4.5_0000034g0110 Nicotiana tabacum HOM05D000502 ORTHO05D000356 1.6e-08 63.5 59 55.9
Atru.chr11.1942 Acer truncatum HOM05D000502 ORTHO05D000356 2.1e-08 63.2 61 55.7
Atru.chr11.1945 Acer truncatum HOM05D000502 ORTHO05D000356 2.1e-08 63.2 52 59.6
PSO170G2276 Papaver somniferum HOM05D000502 ORTHO05D000356 2.1e-08 63.2 114 37.7
TWI18G1226 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 2.8e-08 62.8 52 59.6
unitig_22.g6478 Utricularia gibba HOM05D000502 ORTHO05D000356 2.8e-08 62.8 52 57.7
Cc11_g14130 Coffea canephora HOM05D000502 ORTHO05D000356 3.6e-08 62.4 53 56.6
DCAR_031081 Daucus carota HOM05D000502 ORTHO05D000356 3.6e-08 62.4 52 57.7
Carub.0001s2358 Capsella rubella HOM05D000502 ORTHO05D000356 4.7e-08 62.0 57 56.1
Sabra12G0077000 Salix brachista HOM05D000502 ORTHO05D000356 4.7e-08 62.0 52 59.6
DCAR_026562 Daucus carota HOM05D000502 ORTHO05D000356 6.2e-08 61.6 50 62.0
MD13G1085700 Malus domestica HOM05D000502 ORTHO05D000356 6.2e-08 61.6 52 59.6
RcHm_v2.0_Chr4g0444791 Rosa chinensis HOM05D000502 ORTHO05D000356 8.1e-08 61.2 52 55.8
BcaB07g32413 Brassica carinata HOM05D000502 ORTHO05D000356 1.1e-07 60.8 57 57.9
CDE11G0500 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 1.1e-07 60.8 70 48.6
ClCG09G022150 Citrullus lanatus HOM05D000502 ORTHO05D000356 1.1e-07 60.8 54 55.6
Thhalv10007920m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 1.1e-07 60.8 58 53.4
FvH4_4g35180 Fragaria vesca HOM05D000502 ORTHO05D000356 1.1e-07 60.8 52 55.8
FAN07G1343 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.1e-07 60.8 46 58.7
FAN12G3189 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.1e-07 60.8 52 55.8
Potri.012G104600 Populus trichocarpa HOM05D000502 ORTHO05D000356 1.1e-07 60.8 52 59.6
MSTRG.7861 Avicennia marina HOM05D000502 ORTHO05D000356 1.4e-07 60.5 52 55.8
BcaB07g31192 Brassica carinata HOM05D000502 ORTHO05D000356 1.4e-07 60.5 58 51.7
A09p40750 Brassica napus HOM05D000502 ORTHO05D000356 1.4e-07 60.5 57 57.9
BraA09t39569Z Brassica rapa HOM05D000502 ORTHO05D000356 1.4e-07 60.5 57 57.9
Gohir.A12G051350 Gossypium hirsutum HOM05D000502 ORTHO05D000356 1.4e-07 60.5 53 52.8
Gohir.D12G049600 Gossypium hirsutum HOM05D000502 ORTHO05D000356 1.4e-07 60.5 52 53.8
Gorai.008G052600 Gossypium raimondii HOM05D000502 ORTHO05D000356 1.4e-07 60.5 52 53.8
SGA_v2.0_scaffold87G26999 Striga asiatica HOM05D000502 ORTHO05D000356 1.4e-07 60.5 52 59.6
SGA_v2.0_scaffold8G04264 Striga asiatica HOM05D000502 ORTHO05D000356 1.4e-07 60.5 55 58.2
CARHR024430 Cardamine hirsuta HOM05D000502 ORTHO05D000356 1.8e-07 60.1 56 57.1
MELO3C002936.2 Cucumis melo HOM05D000502 ORTHO05D000356 1.8e-07 60.1 51 56.9
CsaV3_5G025440 Cucumis sativus L. HOM05D000502 ORTHO05D000356 1.8e-07 60.1 51 56.9
Lj6P799T41 Lonicera japonica HOM05D000502 ORTHO05D000356 1.8e-07 60.1 52 55.8
Nitab4.5_0001142g0130 Nicotiana tabacum HOM05D008903 ORTHO05D011660 1.8e-07 60.1 97 39.2
Sed0012239 Sechium edule HOM05D000502 ORTHO05D000356 1.8e-07 60.1 51 58.8
Sed0017339 Sechium edule HOM05D000502 ORTHO05D000356 1.8e-07 60.1 51 56.9
A09p17810 Brassica napus HOM05D000502 ORTHO05D000356 2.3e-07 59.7 58 51.7
Oeu017595.1 Olea europaea HOM05D000502 ORTHO05D000356 2.3e-07 59.7 52 57.7
PGR119G0490 Punica granatum HOM05D000502 ORTHO05D000356 2.3e-07 59.7 52 55.8
Actinidia14997 Actinidia chinensis HOM05D000502 ORTHO05D000356 3.1e-07 59.3 50 60.0
BcaNung02857 Brassica carinata HOM05D000502 ORTHO05D000356 3.1e-07 59.3 111 36.9
BraA09t37414Z Brassica rapa HOM05D000502 ORTHO05D000356 3.1e-07 59.3 59 50.8
FAN07G2497 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.1e-07 59.3 52 53.8
QL03p067186 Quercus lobata HOM05D000502 ORTHO05D000356 3.1e-07 59.3 52 59.6
SalBow8G5169 Salvia bowleyana HOM05D000502 ORTHO05D000356 3.1e-07 59.3 52 55.8
Sp2g04640 Schrenkiella parvula HOM05D000502 ORTHO05D000356 3.1e-07 59.3 58 50.0
BcaC04g22202 Brassica carinata HOM05D000502 ORTHO05D000356 4.0e-07 58.9 58 51.7
C09p22160 Brassica napus HOM05D000502 ORTHO05D000356 4.0e-07 58.9 58 51.7
BolC9t55131H Brassica oleracea HOM05D000502 ORTHO05D000356 4.0e-07 58.9 58 51.7
Gohir.A05G319300 Gossypium hirsutum HOM05D000502 ORTHO05D000356 5.2e-07 58.5 52 57.7
Gohir.A12G216600 Gossypium hirsutum HOM05D000502 ORTHO05D000356 5.2e-07 58.5 111 34.2
Gohir.D05G321500 Gossypium hirsutum HOM05D000502 ORTHO05D000356 5.2e-07 58.5 52 57.7
Gorai.009G345000 Gossypium raimondii HOM05D000502 ORTHO05D000356 5.2e-07 58.5 52 57.7
A03p50070 Brassica napus HOM05D000502 ORTHO05D000356 6.8e-07 58.2 125 34.4
Thhalv10023823m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 6.8e-07 58.2 58 53.4
FAN17G0960 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.8e-07 58.2 46 56.5
FAN17G2703 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.8e-07 58.2 52 53.8
Sp1g21470 Schrenkiella parvula HOM05D000502 ORTHO05D000356 6.8e-07 58.2 55 58.2
AL2G29450 Arabidopsis lyrata HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
AT1G70170 Arabidopsis thaliana HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BcaB03g14795 Brassica carinata HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BcaB03g15531 Brassica carinata HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BcaC08g45839 Brassica carinata HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BcaC08g46467 Brassica carinata HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
A07p31210 Brassica napus HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
A07p36660 Brassica napus HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
C06p36260 Brassica napus HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
C06p44060 Brassica napus HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BolC6t38747H Brassica oleracea HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BolC6t39479H Brassica oleracea HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BraA07t30754Z Brassica rapa HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
BraA07t31234Z Brassica rapa HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
CANSAT01G0382 Cannabis sativa HOM05D000502 ORTHO05D000356 8.9e-07 57.8 52 57.7
Carub.0002s1686 Capsella rubella HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
Ciclev10031870m.g Citrus clementina HOM05D000502 ORTHO05D000356 8.9e-07 57.8 55 52.7
Thhalv10018701m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
FAN22G0541 Fragaria x ananassa HOM05D000502 ORTHO05D000356 8.9e-07 57.8 52 53.8
Nn3g17027 Nelumbo nucifera HOM05D000502 ORTHO05D000356 8.9e-07 57.8 51 60.8
Sp5g25290 Schrenkiella parvula HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 58.5
THA.LOC104822952 Tarenaya hassleriana HOM05D000502 ORTHO05D000356 8.9e-07 57.8 53 56.6
Aa31LG4G10730 Aethionema arabicum HOM05D000502 ORTHO05D000356 1.2e-06 57.4 53 54.7
Eucgr.B02562 Eucalyptus grandis HOM05D000502 ORTHO05D000356 1.2e-06 57.4 52 55.8
PSO455G0094 Papaver somniferum HOM05D000502 ORTHO05D000356 1.2e-06 57.4 52 55.8
BcaC06g33502 Brassica carinata HOM05D000502 ORTHO05D000356 1.5e-06 57.0 125 34.4
C07p48120 Brassica napus HOM05D000502 ORTHO05D000356 1.5e-06 57.0 125 34.4
BolC7t45334H Brassica oleracea HOM05D000502 ORTHO05D000356 1.5e-06 57.0 125 34.4
Cpa.g.sc5.334 Carica papaya HOM05D000502 ORTHO05D000356 1.5e-06 57.0 52 53.8
Duzib251G0396 Durio zibethinus HOM05D000502 ORTHO05D000356 1.5e-06 57.0 52 53.8
Prupe.1G261000 Prunus persica HOM05D000502 ORTHO05D000356 1.5e-06 57.0 52 55.8
SalBow2G0295 Salvia bowleyana HOM05D000502 ORTHO05D000356 1.5e-06 57.0 52 53.8
SalBow2G2082 Salvia bowleyana HOM05D000502 ORTHO05D000356 1.5e-06 57.0 52 53.8
Ca_24580_v3 Cicer arietinum L. HOM05D000502 ORTHO05D004513 2.0e-06 56.6 122 32.0
Duzib205G1700 Durio zibethinus HOM05D000502 ORTHO05D000356 2.0e-06 56.6 116 32.8
Duzib268G1852 Durio zibethinus HOM05D000502 ORTHO05D000356 2.0e-06 56.6 52 55.8
Hma1.2p1_0160F.1_g070550 Hydrangea macrophylla HOM05D000502 ORTHO05D000356 2.0e-06 56.6 52 55.8
QL03p067171 Quercus lobata HOM05D000502 ORTHO05D000356 2.0e-06 56.6 52 55.8
Sabra15G0123700 Salix brachista HOM05D000502 ORTHO05D000356 2.0e-06 56.6 52 55.8
Aa31LG7G7900 Aethionema arabicum HOM05D000502 ORTHO05D000356 2.6e-06 56.2 56 53.6
BraA03t14100Z Brassica rapa HOM05D000502 ORTHO05D000356 2.6e-06 56.2 125 33.6
Gohir.D12G219200 Gossypium hirsutum HOM05D000502 ORTHO05D000356 2.6e-06 56.2 116 31.9
Gorai.008G234800 Gossypium raimondii HOM05D000502 ORTHO05D000356 2.6e-06 56.2 116 31.9
AL2G16780 Arabidopsis lyrata HOM05D000502 ORTHO05D000356 3.4e-06 55.8 58 51.7
CSS0032899 Camellia sinensis var. sinensis HOM05D000502 ORTHO05D000356 3.4e-06 55.8 52 55.8
MBI15_g00961_MAGBIO Magnolia biondii HOM05D000502 ORTHO05D000356 3.4e-06 55.8 53 52.8
Ca_22807_v3 Cicer arietinum L. HOM05D000502 ORTHO05D000356 4.4e-06 55.5 52 55.8
Lj3g0025266 Lotus japonicus HOM05D000502 ORTHO05D000356 4.4e-06 55.5 52 55.8
Manes.01G195600 Manihot esculenta HOM05D000502 ORTHO05D000356 4.4e-06 55.5 52 53.8
Phvul.003G055800 Phaseolus vulgaris HOM05D000502 ORTHO05D000356 4.4e-06 55.5 52 53.8
Psat4g128200 Pisum sativum HOM05D000502 ORTHO05D000356 4.4e-06 55.5 52 55.8
VMungo0251G0998 Vigna mungo HOM05D000502 ORTHO05D000356 4.4e-06 55.5 52 53.8
ECA240G2271 Erigeron canadensis HOM05D000502 ORTHO05D000356 5.8e-06 55.1 63 50.8
Glyma.01G037200 Glycine max HOM05D000502 ORTHO05D000356 5.8e-06 55.1 52 53.8
Medtr8g062770 Medicago truncatula HOM05D000502 ORTHO05D000356 5.8e-06 55.1 52 55.8
THA.LOC104823666 Tarenaya hassleriana HOM05D000502 ORTHO05D000356 5.8e-06 55.1 59 50.8
Thecc.03G250000 Theobroma cacao HOM05D000502 ORTHO05D000356 5.8e-06 55.1 116 32.8
Glyma.08G292300 Glycine max HOM05D000502 ORTHO05D000356 7.6e-06 54.7 52 53.8
Gohir.D12G219100 Gossypium hirsutum HOM05D000502 ORTHO05D000356 7.6e-06 54.7 116 32.8
Lj2g0012859 Lotus japonicus HOM05D000502 ORTHO05D000356 7.6e-06 54.7 55 50.9
Nn4g22921 Nelumbo nucifera HOM05D000502 ORTHO05D000356 7.6e-06 54.7 51 58.8
Potri.001G157500 Populus trichocarpa HOM05D000502 ORTHO05D000356 7.6e-06 54.7 116 31.9
CBR_g28681 Chara braunii HOM05D000502 ORTHO05D000356 9.9e-06 54.3 76 40.8
COL.COLO4_12463 Corchorus olitorius HOM05D000502 ORTHO05D000356 9.9e-06 54.3 45 62.2
Thhalv10025551m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 9.9e-06 54.3 77 44.2
Lj8A263T42 Lonicera japonica HOM05D000502 ORTHO05D000356 9.9e-06 54.3 45 62.2
Sc04g0008810 Simmondsia chinensis HOM05D000502 ORTHO05D000356 9.9e-06 54.3 52 57.7
TPR.G17312 Trifolium pratense HOM05D000502 ORTHO05D000356 9.9e-06 54.3 89 39.3
TWI23G1278 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 9.9e-06 54.3 63 49.2
TAR622G0318 Trochodendron aralioides HOM05D000502 ORTHO05D000356 9.9e-06 54.3 51 54.9
VMungo1215G1999 Vigna mungo HOM05D000502 ORTHO05D000356 9.9e-06 54.3 52 53.8


User provided reference genes

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