Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400039444 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.3e-94 349.7 177 100.0
PGSC0003DMG400037194 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.8e-30 135.6 148 53.4
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 7.9e-28 127.9 351 33.3
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 9.6e-26 120.9 130 56.2
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 9.6e-26 120.9 129 55.8
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 4.8e-25 118.6 129 54.3
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 6.2e-25 118.2 134 53.7
PGSC0003DMG400044487 Solanum tuberosum HOM05D003027 ORTHO05D003455 5.3e-24 115.2 81 70.4
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 4.5e-23 112.1 126 52.4
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.0e-22 110.9 126 54.8
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 1.3e-22 110.5 126 53.2
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 3.2e-21 105.9 128 48.4
PGSC0003DMG400042745 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.1e-20 103.2 92 66.3
PGSC0003DMG400044159 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.9e-19 99.0 116 52.6
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.9e-18 96.7 127 48.0
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 2.5e-18 96.3 127 47.2
PGSC0003DMG400042310 Solanum tuberosum HOM05D003027 ORTHO05D003455 5.7e-18 95.1 76 61.8
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 1.6e-17 93.6 133 44.4
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 4.8e-17 92.0 134 45.5
PGSC0003DMG400045500 Solanum tuberosum HOM05D003027 ORTHO05D003455 8.2e-17 91.3 60 71.7
PGSC0003DMG400044442 Solanum tuberosum HOM05D003027 ORTHO05D003455 6.9e-16 88.2 65 69.2
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 1.5e-15 87.0 127 41.7
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 7.6e-15 84.7 71 67.6
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.7e-14 83.6 127 43.3
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 1.7e-14 83.6 128 43.8
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 2.9e-14 82.8 123 43.9
PGSC0003DMG400034335 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.9e-14 82.8 76 53.9
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.1e-13 80.9 132 41.7
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 1.9e-13 80.1 132 43.2
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 1.9e-13 80.1 92 53.3
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 9.3e-13 77.8 96 49.0
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 1.2e-12 77.4 135 40.7
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 1.6e-12 77.0 136 41.2
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.6e-12 77.0 124 41.1
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 2.1e-12 76.6 133 39.8
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 2.7e-12 76.3 120 44.2
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 3.5e-12 75.9 78 60.3
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 3.5e-12 75.9 133 42.9
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 3.5e-12 75.9 106 47.2
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 6.1e-12 75.1 83 56.6
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 6.1e-12 75.1 121 44.6
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 7.9e-12 74.7 79 57.0
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 7.9e-12 74.7 135 41.5
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 7.9e-12 74.7 135 41.5
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 1.0e-11 74.3 80 55.0
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 1.3e-11 73.9 80 52.5
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 2.3e-11 73.2 136 38.2
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 2.3e-11 73.2 75 56.0
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 2.3e-11 73.2 80 57.5
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 3.0e-11 72.8 120 41.7
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 3.0e-11 72.8 120 41.7
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 3.0e-11 72.8 129 41.1
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 3.0e-11 72.8 121 38.8
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 3.9e-11 72.4 76 57.9
CAN.G251.10 Capsicum annuum HOM05D000856 ORTHO05D001792 3.9e-11 72.4 113 44.2
TAR636G3275 Trochodendron aralioides HOM05D003027 ORTHO05D003455 3.9e-11 72.4 128 43.0
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 5.1e-11 72.0 73 60.3
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 1.1e-10 70.9 70 55.7
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 1.1e-10 70.9 120 40.8
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 1.1e-10 70.9 117 39.3
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 1.5e-10 70.5 132 37.1
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 1.9e-10 70.1 129 37.2
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 2.5e-10 69.7 136 37.5
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 5.7e-10 68.6 122 41.8
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 5.7e-10 68.6 122 40.2
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 5.7e-10 68.6 122 38.5
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 5.7e-10 68.6 120 43.3
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 9.7e-10 67.8 131 39.7
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 9.7e-10 67.8 122 37.7
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 1.3e-09 67.4 111 38.7
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.3e-09 67.4 126 38.1
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.3e-09 67.4 118 41.5
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 1.3e-09 67.4 126 39.7
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 1.3e-09 67.4 79 49.4
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.3e-09 67.4 120 40.8
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 1.6e-09 67.0 114 42.1
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.6e-09 67.0 71 53.5
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 3.7e-09 65.9 71 56.3
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 4.8e-09 65.5 80 53.8
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 4.8e-09 65.5 80 53.8
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 8.2e-09 64.7 140 36.4
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 8.2e-09 64.7 73 54.8
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 1.1e-08 64.3 73 54.8
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 1.4e-08 63.9 80 47.5
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 1.4e-08 63.9 83 50.6
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 1.8e-08 63.5 84 51.2
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 2.4e-08 63.2 123 36.6
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 2.4e-08 63.2 123 36.6
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 2.4e-08 63.2 119 37.0
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 3.1e-08 62.8 133 36.8
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 3.1e-08 62.8 137 38.0
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 4.1e-08 62.4 78 53.8
Solyc04g150153.1 Solanum lycopersicum HOM05D003027 ORTHO05D003455 4.1e-08 62.4 49 67.3
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 5.3e-08 62.0 114 37.7
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 6.9e-08 61.6 126 35.7
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 6.9e-08 61.6 126 35.7
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 6.9e-08 61.6 118 39.0
Sc19g0007990 Simmondsia chinensis HOM05D003027 ORTHO05D003455 6.9e-08 61.6 114 39.5
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 9.0e-08 61.2 109 37.6
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 9.0e-08 61.2 129 38.8
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 9.0e-08 61.2 91 45.1
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 1.2e-07 60.8 126 35.7
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 1.2e-07 60.8 130 36.2
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.2e-07 60.8 126 35.7
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.2e-07 60.8 135 37.8
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 1.5e-07 60.5 135 36.3
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 2.6e-07 59.7 132 37.1
BcaC02g12870 Brassica carinata HOM05D003027 ORTHO05D003455 2.6e-07 59.7 112 35.7
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 2.6e-07 59.7 112 35.7
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 3.4e-07 59.3 127 37.0
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 3.4e-07 59.3 71 52.1
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 3.4e-07 59.3 110 36.4
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 4.5e-07 58.9 115 35.7
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 4.5e-07 58.9 133 36.8
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 5.9e-07 58.5 71 52.1
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 5.9e-07 58.5 117 37.6
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 5.9e-07 58.5 131 38.2
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 7.7e-07 58.2 126 34.1
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 7.7e-07 58.2 128 35.9
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 7.7e-07 58.2 129 33.3
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.0e-06 57.8 120 39.2
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 1.0e-06 57.8 120 39.2
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 1.0e-06 57.8 128 35.9
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.0e-06 57.8 118 38.1
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.0e-06 57.8 118 39.0
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 1.3e-06 57.4 122 35.2
AL3G22300 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.3e-06 57.4 120 40.0
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 1.3e-06 57.4 102 38.2
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.7e-06 57.0 124 35.5
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.7e-06 57.0 126 38.1
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 1.7e-06 57.0 126 38.1
Sp3g09120 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.7e-06 57.0 120 32.5
CARHR085360 Cardamine hirsuta HOM05D003027 ORTHO05D003455 2.2e-06 56.6 125 37.6
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 2.2e-06 56.6 76 46.1
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 2.9e-06 56.2 126 36.5
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 5.0e-06 55.5 127 37.8
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 5.0e-06 55.5 118 38.1
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 5.0e-06 55.5 118 38.1
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 5.0e-06 55.5 118 38.1
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 5.0e-06 55.5 118 38.1
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 5.0e-06 55.5 77 46.8
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 6.5e-06 55.1 126 36.5


User provided reference genes

Program Settings