Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400036857 Solanum tuberosum HOM05D002925 ORTHO05D003247 6.5e-91 337.4 177 100.0
Sopen02g012230 Solanum pennellii HOM05D002925 ORTHO05D003247 1.1e-66 256.9 173 79.8
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 3.2e-53 212.2 206 63.6
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 9.2e-53 210.7 206 63.1
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 1.2e-52 210.3 205 63.4
Sopen02g012380 Solanum pennellii HOM05D002925 ORTHO05D003247 1.2e-52 210.3 170 70.6
Sopen02g012270 Solanum pennellii HOM05D002925 ORTHO05D003247 8.4e-46 187.6 170 64.1
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.1e-37 160.6 175 58.3
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 5.6e-34 148.3 196 53.6
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 3.6e-33 145.6 172 55.2
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 8.4e-30 134.4 176 52.3
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 2.3e-27 126.3 180 47.8
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 5.1e-27 125.2 186 50.0
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 4.8e-25 118.6 163 47.9
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 2.4e-24 116.3 187 43.9
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 3.1e-24 115.9 137 53.3
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 4.0e-24 115.5 187 46.5
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 4.0e-24 115.5 177 47.5
Oeu024826.1 Olea europaea HOM05D002925 ORTHO05D003247 6.9e-24 114.8 187 46.0
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.2e-23 114.0 193 46.6
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.4e-23 112.5 173 47.4
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 5.8e-23 111.7 164 47.6
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 4.9e-22 108.6 134 48.5
Haze_22282 Corylus avellana HOM05D002925 ORTHO05D003247 4.9e-22 108.6 199 40.7
Solyc04g074260.1 Solanum lycopersicum HOM05D002925 ORTHO05D003247 1.1e-21 107.5 151 47.7
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 3.2e-21 105.9 172 48.8
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.2e-20 104.0 153 47.1
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.6e-20 103.6 153 44.4
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 2.1e-20 103.2 138 50.0
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 2.1e-20 103.2 202 43.1
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 2.1e-20 103.2 177 45.2
Lsat_1_v5_gn_1_3860 Lactuca sativa HOM05D002925 ORTHO05D003247 2.7e-20 102.8 166 42.8
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 1.0e-19 100.9 195 42.1
Nn5g30080 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.3e-19 100.5 156 44.9
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 2.3e-19 99.8 131 49.6
Dinv44782 Davidia involucrata HOM05D002925 ORTHO05D003247 3.0e-19 99.4 160 43.1
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 5.1e-19 98.6 221 38.5
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.5e-18 97.1 189 41.3
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 1.5e-18 97.1 167 44.9
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.5e-18 97.1 199 37.7
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 1.9e-18 96.7 140 45.0
Cpa.g.sc53.130 Carica papaya HOM05D002925 ORTHO05D003247 2.5e-18 96.3 186 37.1
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 3.3e-18 95.9 127 52.0
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 7.4e-18 94.7 176 39.2
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 9.6e-18 94.4 197 38.6
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 2.1e-17 93.2 209 40.2
Psat5g138880 Pisum sativum HOM05D002925 ORTHO05D003247 4.8e-17 92.0 173 36.4
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 6.2e-17 91.7 116 47.4
Glyma.04G101200 Glycine max HOM05D002925 ORTHO05D003247 8.2e-17 91.3 167 43.7
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 8.2e-17 91.3 138 42.8
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 1.1e-16 90.9 185 41.6
PSO531G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 1.8e-16 90.1 156 44.2
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 1.8e-16 90.1 208 38.5
RcHm_v2.0_Chr7g0243951 Rosa chinensis HOM05D002925 ORTHO05D003247 2.4e-16 89.7 174 42.0
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 3.1e-16 89.4 188 39.4
Medtr3g074640 Medicago truncatula HOM05D002925 ORTHO05D003247 3.1e-16 89.4 171 38.6
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 4.1e-16 89.0 119 49.6
MD00G1009700 Malus domestica HOM05D002925 ORTHO05D003247 4.1e-16 89.0 164 42.1
VMungo1309G2842 Vigna mungo HOM05D002925 ORTHO05D003247 1.2e-15 87.4 166 41.6
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.5e-15 87.0 166 40.4
Phvul.009G031600 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 1.5e-15 87.0 173 38.7
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 2.0e-15 86.7 126 48.4
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 2.0e-15 86.7 125 42.4
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.6e-15 86.3 180 38.9
Glyma.06G102900 Glycine max HOM05D002925 ORTHO05D003247 2.6e-15 86.3 171 40.9
arahy.Tifrunner.gnm1.ann1.66CWE3 Arachis hypogaea HOM05D002925 ORTHO05D003247 3.4e-15 85.9 120 45.8
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 4.5e-15 85.5 125 44.0
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.5e-15 85.5 196 37.2
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.5e-15 85.5 196 37.2
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 4.5e-15 85.5 196 37.2
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 4.5e-15 85.5 203 35.0
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 7.6e-15 84.7 114 50.0
arahy.Tifrunner.gnm1.ann1.8R41I4 Arachis hypogaea HOM05D002925 ORTHO05D003247 1.0e-14 84.3 120 45.0
ECA232G0543 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.3e-14 84.0 157 40.8
CsaV3_2G029730 Cucumis sativus L. HOM05D002925 ORTHO05D003247 1.7e-14 83.6 195 40.0
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 1.7e-14 83.6 170 38.8
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 2.2e-14 83.2 139 41.7
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.2e-14 83.2 164 39.6
ClCG08G011160 Citrullus lanatus HOM05D002925 ORTHO05D003247 2.9e-14 82.8 128 48.4
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 2.9e-14 82.8 205 37.6
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 6.5e-14 81.6 187 39.0
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 8.4e-14 81.3 171 39.2
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 1.1e-13 80.9 74 59.5
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.9e-13 80.1 176 37.5
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 3.2e-13 79.3 170 41.8
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 4.2e-13 79.0 187 36.4
MELO3C011031.2 Cucumis melo HOM05D002925 ORTHO05D003247 5.5e-13 78.6 192 38.5
Lj1g0024313 Lotus japonicus HOM05D002925 ORTHO05D003247 5.5e-13 78.6 125 47.2
SGA_v2.0_scaffold74G24575 Striga asiatica HOM05D002925 ORTHO05D003247 7.2e-13 78.2 143 42.7
TPR.G26131 Trifolium pratense HOM05D002925 ORTHO05D003247 1.6e-12 77.0 193 33.7
AL1G35760 Arabidopsis lyrata HOM05D002925 ORTHO05D003247 2.1e-12 76.6 181 35.9
Ca_15252_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 2.1e-12 76.6 163 35.6
AT1G22310 Arabidopsis thaliana HOM05D002925 ORTHO05D003247 2.7e-12 76.3 182 35.7
C07p21440 Brassica napus HOM05D002925 ORTHO05D003247 6.1e-12 75.1 165 35.8
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 7.9e-12 74.7 160 40.0
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 1.0e-11 74.3 111 42.3
Sed0026617 Sechium edule HOM05D002925 ORTHO05D003247 1.3e-11 73.9 172 40.7
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 2.3e-11 73.2 117 40.2
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 2.3e-11 73.2 118 42.4
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 3.0e-11 72.8 111 38.7
PSO541G2635 Papaver somniferum HOM05D002925 ORTHO05D003247 3.0e-11 72.8 133 41.4
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 3.0e-11 72.8 61 60.7
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.1e-10 70.9 161 36.6
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 1.1e-10 70.9 59 54.2
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 1.1e-10 70.9 182 33.0
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.5e-10 69.7 111 37.8
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 2.5e-10 69.7 107 41.1
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 2.5e-10 69.7 164 31.1
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 7.4e-10 68.2 161 31.1
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 1.3e-09 67.4 132 37.1
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 1.3e-09 67.4 62 51.6
BcaB03g14218 Brassica carinata HOM05D002925 ORTHO05D003247 1.3e-09 67.4 208 31.7
BolC7t42671H Brassica oleracea HOM05D000298 ORTHO05D003247 1.3e-09 67.4 174 32.2
Carub.0001s2186 Capsella rubella HOM05D002925 ORTHO05D003247 1.3e-09 67.4 124 39.5
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 1.3e-09 67.4 167 35.3
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 1.3e-09 67.4 108 45.4
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 1.6e-09 67.0 109 40.4
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.2e-09 66.6 145 35.9
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.2e-09 66.6 149 36.2
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 2.2e-09 66.6 145 35.9
Sp1g19810 Schrenkiella parvula HOM05D002925 ORTHO05D003247 2.2e-09 66.6 199 31.7
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 2.8e-09 66.2 135 34.8
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 2.8e-09 66.2 122 38.5
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 2.8e-09 66.2 181 33.1
THA.LOC104800147 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 2.8e-09 66.2 190 34.2
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 3.7e-09 65.9 161 36.0
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 4.8e-09 65.5 160 31.2
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 6.3e-09 65.1 115 41.7
Aa31LG7G6230 Aethionema arabicum HOM05D002925 ORTHO05D003247 6.3e-09 65.1 140 39.3
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 6.3e-09 65.1 79 48.1
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 6.3e-09 65.1 79 48.1
Atru.chr10.1121 Acer truncatum HOM05D002925 ORTHO05D003247 8.2e-09 64.7 172 34.9
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 1.4e-08 63.9 165 35.2
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 1.4e-08 63.9 150 34.7
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 1.8e-08 63.5 109 38.5
Cpa.g.sc42.36 Carica papaya HOM05D002925 ORTHO05D003247 2.4e-08 63.2 108 37.0
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 2.4e-08 63.2 80 43.8
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 5.3e-08 62.0 95 42.1
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 5.3e-08 62.0 142 34.5
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.2e-07 60.8 137 35.8
Rhsim11G0125300 Rhododendron simsii HOM05D002925 ORTHO05D050653 1.2e-07 60.8 58 53.4
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 2.6e-07 59.7 153 31.4
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 3.4e-07 59.3 158 34.8
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 3.4e-07 59.3 160 33.1
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.4e-07 59.3 104 40.4
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.4e-07 59.3 160 33.1
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 3.4e-07 59.3 194 35.1
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 4.5e-07 58.9 195 30.8
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 7.7e-07 58.2 145 34.5
A07p14550 Brassica napus HOM05D002925 ORTHO05D003247 1.0e-06 57.8 187 29.9
BraA07t29201Z Brassica rapa HOM05D002925 ORTHO05D003247 1.0e-06 57.8 187 29.9
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 1.3e-06 57.4 108 35.2
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 1.3e-06 57.4 159 31.4
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.7e-06 57.0 162 35.2
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 2.2e-06 56.6 109 39.4
Thhalv10007200m.g Eutrema salsugineum HOM05D002925 ORTHO05D003247 2.2e-06 56.6 167 32.3
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 2.9e-06 56.2 109 38.5
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 3.8e-06 55.8 100 38.0
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 3.8e-06 55.8 118 37.3
Os09g0473350 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 3.8e-06 55.8 58 55.2
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 5.0e-06 55.5 150 29.3


User provided reference genes

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