Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1257.7 635 100.0
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1251.1 635 99.1
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1248.0 635 98.9
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1214.1 635 95.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1194.9 630 94.6
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1194.1 635 94.8
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 633 90.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 633 89.4
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 632 90.7
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 633 90.4
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 633 90.2
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 635 89.9
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 633 89.7
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 632 89.9
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 633 89.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 633 89.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 635 89.0
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 632 89.6
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 633 89.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 633 89.4
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 633 89.4
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 633 89.4
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 633 89.9
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 633 88.8
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 635 89.1
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 635 88.3
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 635 88.5
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 633 89.6
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 633 88.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 635 89.0
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 635 88.8
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 633 90.2
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 633 89.6
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 635 89.0
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 633 89.4
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 633 89.1
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 88.9
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 632 88.9
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 633 89.4
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 632 88.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 632 88.9
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 643 88.0
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 635 88.8
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 632 88.8
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 633 88.8
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 633 88.6
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 633 89.1
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 633 88.5
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 627 89.5
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 632 88.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 629 89.3
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 633 88.6
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 630 89.0
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 630 88.4
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 629 89.2
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 633 88.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 633 88.3
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 632 88.4
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 633 88.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 633 88.5
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 633 88.6
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 630 88.4
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 632 88.1
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 632 87.8
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 633 88.2
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 630 87.9
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 630 88.3
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 660 85.8
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 632 88.3
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1129.8 633 87.7
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1129.0 633 87.8
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 632 88.0
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 633 88.8
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 632 87.7
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 632 87.3
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 632 87.3
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 632 87.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 632 87.2
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 627 88.0
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 632 87.7
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 632 87.2
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 633 86.6
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1119.4 635 86.8
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 633 86.3
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 632 86.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1115.5 582 95.2
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 633 86.6
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1113.2 632 86.2
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1113.2 635 85.5
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 632 87.5
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1107.8 635 85.5
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1102.4 628 87.3
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 632 85.0
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1100.9 632 85.6
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1096.6 630 86.2
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1094.0 633 84.8
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1093.6 632 84.2
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1083.2 635 83.9
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 3.9e-311 1070.8 628 83.4
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 7.3e-310 1066.6 628 83.1
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 6.9e-308 1060.1 643 83.2
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 5.8e-307 1057.0 628 82.0
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.0e-299 1031.9 630 80.6
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 8.4e-290 1000.0 635 77.3
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 7.6e-283 976.9 534 89.9
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.9e-281 972.2 534 89.9
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.1e-278 963.0 537 89.2
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 8.5e-274 946.8 648 73.6
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.4e-265 919.5 629 73.1
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 6.1e-264 914.1 630 74.3
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.0e-262 909.1 648 71.5
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.7e-258 896.0 495 89.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 7.0e-244 847.4 635 71.0
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 5.9e-243 844.3 503 84.3
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.7e-242 842.8 503 83.7
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.8e-237 825.5 638 66.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 3.5e-235 818.5 633 69.0
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 4.5e-235 818.1 499 81.6
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.3e-225 785.0 642 62.1
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 7.3e-201 704.5 444 79.3
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.1e-191 672.5 535 67.9
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 6.2e-184 648.3 642 53.7
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.0e-175 619.0 446 71.5
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.9e-174 614.4 354 85.3
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.9e-161 573.5 407 73.2
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.2e-155 554.3 311 89.7
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 4.4e-145 519.2 291 88.0
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 3.5e-134 483.0 273 87.5
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.2e-113 414.8 527 43.6
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 3.7e-96 356.7 197 89.8
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.0e-85 320.5 236 69.5
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.2e-83 315.1 181 86.2
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 2.8e-83 313.9 231 69.7
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.9e-76 291.2 162 87.7
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.4e-73 280.4 163 84.7
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 4.6e-70 270.0 633 32.5
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.5e-57 226.9 273 48.4
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.6e-51 208.4 230 54.8
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 2.5e-44 184.5 101 91.1
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.0e-40 170.2 101 82.2
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.4e-39 168.7 104 77.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 4.2e-39 167.2 99 82.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 6.7e-37 159.8 86 82.6
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 6.7e-37 159.8 157 59.2
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 5.7e-36 156.8 90 85.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 4.8e-35 153.7 127 65.4
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.1e-34 152.5 77 89.6
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 4.5e-33 147.1 91 78.0
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.7e-32 145.2 172 50.0
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 3.0e-21 107.8 116 53.4
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.0e-20 105.1 59 84.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 4.4e-20 104.0 53 92.5
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 4.8e-19 100.5 63 71.4
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 2.6e-17 94.7 51 86.3
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 7.7e-17 93.2 60 73.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 5.0e-16 90.5 49 85.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 2.0e-12 78.6 56 64.3
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.7e-09 68.2 65 52.3


User provided reference genes

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