Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030989 Solanum tuberosum HOM05D001292 ORTHO05D001202 2.5e-22 107.8 52 100.0
Sopen05g001630 Solanum pennellii HOM05D001292 ORTHO05D001202 5.2e-20 100.1 52 94.2
Peaxi162Scf00338g00116 Petunia axillaris HOM05D001292 ORTHO05D001202 3.8e-15 84.0 50 82.0
Nitab4.5_0002579g0090 Nicotiana tabacum HOM05D001292 ORTHO05D001202 7.2e-14 79.7 47 78.7
Solyc04g026200.3 Solanum lycopersicum HOM05D001292 ORTHO05D001202 7.2e-14 79.7 50 78.0
Sopen04g014200 Solanum pennellii HOM05D001292 ORTHO05D001202 2.1e-13 78.2 50 76.0
Nitab4.5_0000113g0260 Nicotiana tabacum HOM05D001292 ORTHO05D001202 8.0e-13 76.3 52 73.1
CAN.G376.11 Capsicum annuum HOM05D001292 ORTHO05D001202 1.0e-12 75.9 51 72.5
Nitab4.5_0004636g0020 Nicotiana tabacum HOM05D001292 ORTHO05D001202 2.3e-12 74.7 50 68.0
Nitab4.5_0000034g0260 Nicotiana tabacum HOM05D001292 ORTHO05D001202 4.0e-12 73.9 47 72.3
Oeu056395.2 Olea europaea HOM05D001292 ORTHO05D001202 2.0e-11 71.6 47 68.1
CAN.G60.9 Capsicum annuum HOM05D001292 ORTHO05D001202 2.6e-11 71.2 49 69.4
Cc11_g14630 Coffea canephora HOM05D001292 ORTHO05D001202 2.6e-11 71.2 51 62.7
Dinv15305 Davidia involucrata HOM05D001292 ORTHO05D001202 9.8e-11 69.3 49 67.3
PSO063G4088 Papaver somniferum HOM05D001292 ORTHO05D001202 9.8e-11 69.3 47 68.1
Sabra10G0026500 Salix brachista HOM05D001292 ORTHO05D001202 9.8e-11 69.3 47 68.1
PSO832G2131 Papaver somniferum HOM05D001292 ORTHO05D001202 1.3e-10 68.9 47 68.1
QL03p061415 Quercus lobata HOM05D001292 ORTHO05D001202 1.3e-10 68.9 50 70.0
Cpa.g.sc69.25 Carica papaya HOM05D001292 ORTHO05D001202 1.7e-10 68.6 46 73.9
SGA_v2.0_scaffold165G38250 Striga asiatica HOM05D001292 ORTHO05D001202 1.7e-10 68.6 45 68.9
SGA_v2.0_scaffold8G04226 Striga asiatica HOM05D001292 ORTHO05D001202 1.7e-10 68.6 45 68.9
CSS0049204 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 2.2e-10 68.2 47 66.0
Cfa009140 Carpinus fangiana HOM05D001292 ORTHO05D001202 2.8e-10 67.8 50 64.0
Dinv24863 Davidia involucrata HOM05D001292 ORTHO05D001202 2.8e-10 67.8 45 71.1
Potri.010G040600 Populus trichocarpa HOM05D001292 ORTHO05D001202 2.8e-10 67.8 47 66.0
CANSAT01G2663 Cannabis sativa HOM05D001292 ORTHO05D001202 3.7e-10 67.4 46 69.6
FvH4_4g34560 Fragaria vesca HOM05D001292 ORTHO05D001202 3.7e-10 67.4 49 61.2
FAN22G1387 Fragaria x ananassa HOM05D001292 ORTHO05D001202 3.7e-10 67.4 49 61.2
MBI16_g36056_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 3.7e-10 67.4 47 63.8
Thecc.02G248100 Theobroma cacao HOM05D001292 ORTHO05D001202 3.7e-10 67.4 50 62.0
Duzib248G1000 Durio zibethinus HOM05D001292 ORTHO05D001202 4.8e-10 67.0 50 62.0
Nn4g22805 Nelumbo nucifera HOM05D001292 ORTHO05D001202 6.3e-10 66.6 47 66.0
Gohir.D04G178300 Gossypium hirsutum HOM05D001292 ORTHO05D001202 8.3e-10 66.2 51 58.8
Gorai.012G171400 Gossypium raimondii HOM05D001292 ORTHO05D001202 8.3e-10 66.2 51 58.8
Lsat_1_v5_gn_3_48100 Lactuca sativa HOM05D001292 ORTHO05D001202 8.3e-10 66.2 51 60.8
TWI18G1467 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 8.3e-10 66.2 49 63.3
GSVIVG01020235001 Vitis vinifera HOM05D001292 ORTHO05D001202 8.3e-10 66.2 50 62.0
CiPaw.05G150600 Carya illinoinensis HOM05D001292 ORTHO05D001202 1.1e-09 65.9 46 69.6
Gohir.A04G135200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.8e-09 65.1 50 58.0
VMungo0251G2116 Vigna mungo HOM05D001292 ORTHO05D001202 1.8e-09 65.1 47 63.8
Actinidia13513 Actinidia chinensis HOM05D001292 ORTHO05D001202 3.1e-09 64.3 47 63.8
MSTRG.7894 Avicennia marina HOM05D001292 ORTHO05D001202 3.1e-09 64.3 46 63.0
RcHm_v2.0_Chr4g0443941 Rosa chinensis HOM05D001292 ORTHO05D001202 3.1e-09 64.3 49 61.2
Atru.chr11.2015 Acer truncatum HOM05D001292 ORTHO05D001202 4.1e-09 63.9 46 63.0
MSTRG.597 Avicennia marina HOM05D001292 ORTHO05D001202 4.1e-09 63.9 50 62.0
Manes.12G029500 Manihot esculenta HOM05D001292 ORTHO05D001202 4.1e-09 63.9 47 63.8
CSS0024382 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 5.4e-09 63.5 50 56.0
TAR374G1183 Trochodendron aralioides HOM05D001292 ORTHO05D001202 5.4e-09 63.5 46 63.0
Ciclev10031081m.g Citrus clementina HOM05D001292 ORTHO05D001202 7.0e-09 63.2 46 60.9
Oeu034571.1 Olea europaea HOM05D001292 ORTHO05D001202 7.0e-09 63.2 50 56.0
Phvul.003G052200 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 7.0e-09 63.2 47 59.6
DCAR_007092 Daucus carota HOM05D001292 ORTHO05D001202 9.1e-09 62.8 49 61.2
Eucgr.H02612 Eucalyptus grandis HOM05D001292 ORTHO05D001202 9.1e-09 62.8 50 56.0
Glyma.08G287700 Glycine max HOM05D001292 ORTHO05D001202 1.2e-08 62.4 47 61.7
ATR0730G146 Amborella trichopoda HOM05D001292 ORTHO05D001202 1.6e-08 62.0 46 60.9
Migut.L01409 Erythranthe guttata HOM05D001292 ORTHO05D001202 2.7e-08 61.2 50 52.0
Rhsim12G0121000 Rhododendron simsii HOM05D001292 ORTHO05D001202 2.7e-08 61.2 47 59.6
arahy.Tifrunner.gnm1.ann1.UYF69H Arachis hypogaea HOM05D001292 ORTHO05D001202 3.5e-08 60.8 51 56.9
MELO3C012000.2 Cucumis melo HOM05D001292 ORTHO05D001202 3.5e-08 60.8 47 57.4
CsaV3_5G031600 Cucumis sativus L. HOM05D001292 ORTHO05D001202 3.5e-08 60.8 47 57.4
arahy.Tifrunner.gnm1.ann1.XAFC77 Arachis hypogaea HOM05D001292 ORTHO05D001202 4.5e-08 60.5 51 56.9
Glyma.18G137700 Glycine max HOM05D001292 ORTHO05D001202 4.5e-08 60.5 47 59.6
PGR119G2170 Punica granatum HOM05D001292 ORTHO05D001202 4.5e-08 60.5 46 63.0
Prupe.1G254600 Prunus persica HOM05D001292 ORTHO05D001202 7.7e-08 59.7 47 55.3
Lalb_Chr09g0335011 Lupinus albus HOM05D001292 ORTHO05D001202 1.0e-07 59.3 47 57.4
Hund25343 Selenicereus undatus HOM05D001292 ORTHO05D001202 1.0e-07 59.3 52 55.8
HPP92_008297 Vanilla planifolia HOM05D001292 ORTHO05D001202 1.0e-07 59.3 47 55.3
Ah.02g129900 Amaranthus hybridus HOM05D001292 ORTHO05D001202 1.3e-07 58.9 45 57.8
Aqoxy3G02988 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 1.3e-07 58.9 47 59.6
ECA233G2320 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.3e-07 58.9 51 51.0
Manes.13G030900 Manihot esculenta HOM05D001292 ORTHO05D001202 1.3e-07 58.9 50 52.0
ClCG05G025290 Citrullus lanatus HOM05D001292 ORTHO05D001202 1.7e-07 58.5 47 55.3
HanXRQChr12g0368581 Helianthus annuus HOM05D001292 ORTHO05D001202 1.7e-07 58.5 51 52.9
HanXRQChr15g0490121 Helianthus annuus HOM05D001292 ORTHO05D001202 1.7e-07 58.5 51 49.0
SEGI_12549 Sequoiadendron giganteum HOM05D001292 ORTHO05D001202 2.9e-07 57.8 46 52.2
Sc11g0001210 Simmondsia chinensis HOM05D001292 ORTHO05D001202 2.9e-07 57.8 45 57.8
Ca_22729_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 3.8e-07 57.4 47 55.3
Sed0021630 Sechium edule HOM05D001292 ORTHO05D001202 5.0e-07 57.0 46 54.3
HPP92_020276 Vanilla planifolia HOM05D001292 ORTHO05D001202 6.5e-07 56.6 46 52.2
ECA246G0922 Erigeron canadensis HOM05D001292 ORTHO05D001202 8.5e-07 56.2 41 65.9
Lj4g0026951 Lotus japonicus HOM05D001292 ORTHO05D001202 1.1e-06 55.8 47 53.2
unitig_26.g10341 Utricularia gibba HOM05D001292 ORTHO05D001202 1.1e-06 55.8 45 57.8
Lsat_1_v5_gn_8_157321 Lactuca sativa HOM05D001292 ORTHO05D001202 2.5e-06 54.7 37 64.9
Medtr8g064470 Medicago truncatula HOM05D001292 ORTHO05D001202 2.5e-06 54.7 50 56.0
BcaC04g22220 Brassica carinata HOM05D001292 ORTHO05D001202 3.2e-06 54.3 45 55.6
C09p21960 Brassica napus HOM05D001292 ORTHO05D001202 3.2e-06 54.3 45 55.6
BolC9t55101H Brassica oleracea HOM05D001292 ORTHO05D001202 3.2e-06 54.3 45 55.6
Carub.0002s0503 Capsella rubella HOM05D001292 ORTHO05D001202 3.2e-06 54.3 45 57.8
AL2G16440 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 4.2e-06 53.9 46 54.3
A09p17630 Brassica napus HOM05D001292 ORTHO05D001202 4.2e-06 53.9 45 55.6
THA.LOC104823662 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 4.2e-06 53.9 46 56.5
AT1G60220 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 5.5e-06 53.5 46 54.3
BraA09t37393Z Brassica rapa HOM05D001292 ORTHO05D001202 7.2e-06 53.1 45 55.6


User provided reference genes

Program Settings