Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030007 Solanum tuberosum HOM05D001100 ORTHO05D001503 2.1e-77 292.4 153 100.0
PGSC0003DMG400023321 Solanum tuberosum HOM05D001100 ORTHO05D001503 1.3e-15 87.0 50 92.0
Peaxi162Scf00525g00018 Petunia axillaris HOM05D001100 ORTHO05D001503 3.0e-15 85.9 50 92.0
Nitab4.5_0006981g0010 Nicotiana tabacum HOM05D001100 ORTHO05D001503 5.1e-15 85.1 51 88.2
CAN.G1156.49 Capsicum annuum HOM05D001100 ORTHO05D001503 6.6e-15 84.7 50 90.0
Nitab4.5_0000496g0090 Nicotiana tabacum HOM05D001100 ORTHO05D001503 8.6e-15 84.3 50 90.0
Sopen05g034890 Solanum pennellii HOM05D001100 ORTHO05D001503 1.5e-14 83.6 50 90.0
Solyc05g056490.4 Solanum lycopersicum HOM05D001100 ORTHO05D001503 5.6e-14 81.6 88 58.0
Haze_25258 Corylus avellana HOM05D001100 ORTHO05D001503 3.6e-13 79.0 53 77.4
vmacro18671 Vaccinium macrocarpon HOM05D001100 ORTHO05D001503 3.6e-13 79.0 78 59.0
Aa31LG1G17920 Aethionema arabicum HOM05D001100 ORTHO05D001503 4.7e-13 78.6 94 52.1
AL8G41240 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 1.1e-12 77.4 50 80.0
AT5G63980 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 1.1e-12 77.4 50 80.0
GSVIVG01026471001 Vitis vinifera HOM05D001100 ORTHO05D001503 1.1e-12 77.4 50 80.0
Carub.0008s2476 Capsella rubella HOM05D001100 ORTHO05D001503 1.8e-12 76.6 50 80.0
Hma1.2p1_0539F.1_g174620 Hydrangea macrophylla HOM05D001100 ORTHO05D001503 1.8e-12 76.6 50 80.0
MD01G1008900 Malus domestica HOM05D001100 ORTHO05D001503 1.8e-12 76.6 63 66.7
C03p62360 Brassica napus HOM05D001100 ORTHO05D001503 2.3e-12 76.3 50 78.0
C09p09630 Brassica napus HOM05D001100 ORTHO05D001503 2.3e-12 76.3 50 78.0
BolC9t53874H Brassica oleracea HOM05D001100 ORTHO05D001503 2.3e-12 76.3 50 78.0
Dinv24378 Davidia involucrata HOM05D001100 ORTHO05D001503 2.3e-12 76.3 50 78.0
PSO170G6694 Papaver somniferum HOM05D001100 ORTHO05D001503 2.3e-12 76.3 50 78.0
PSO528G0154 Papaver somniferum HOM05D001100 ORTHO05D001503 2.3e-12 76.3 50 78.0
CSS0011776 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 3.1e-12 75.9 55 72.7
CSS0018704 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 3.1e-12 75.9 55 72.7
Dinv07109 Davidia involucrata HOM05D001100 ORTHO05D001503 3.1e-12 75.9 76 59.2
Manes.12G156600 Manihot esculenta HOM05D001100 ORTHO05D001503 3.1e-12 75.9 50 80.0
A06p30600 Brassica napus HOM05D001100 ORTHO05D001503 4.0e-12 75.5 50 78.0
Cc07_g18630 Coffea canephora HOM05D001100 ORTHO05D001503 4.0e-12 75.5 50 78.0
Thhalv10004312m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 4.0e-12 75.5 88 52.3
TAR381G0336 Trochodendron aralioides HOM05D001100 ORTHO05D001503 4.0e-12 75.5 50 78.0
Actinidia01386 Actinidia chinensis HOM05D001100 ORTHO05D001503 6.8e-12 74.7 50 78.0
A09p08500 Brassica napus HOM05D001100 ORTHO05D001503 6.8e-12 74.7 50 78.0
BraA09t36499Z Brassica rapa HOM05D001100 ORTHO05D001503 6.8e-12 74.7 50 78.0
Sp2g27050 Schrenkiella parvula HOM05D001100 ORTHO05D001503 6.8e-12 74.7 88 52.3
Cfa002905 Carpinus fangiana HOM05D001100 ORTHO05D001503 1.2e-11 73.9 90 51.1
CiPaw.03G120600 Carya illinoinensis HOM05D001100 ORTHO05D001503 1.2e-11 73.9 50 76.0
PGR119G0884 Punica granatum HOM05D001100 ORTHO05D001503 1.2e-11 73.9 87 51.7
TWI79G1082 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 1.2e-11 73.9 87 55.2
Migut.H00694 Erythranthe guttata HOM05D001100 ORTHO05D001503 1.5e-11 73.6 50 78.0
Potri.005G063900 Populus trichocarpa HOM05D001100 ORTHO05D001503 1.5e-11 73.6 50 76.0
Aqoxy1G01118 Aquilegia oxysepala HOM05D001100 ORTHO05D001503 2.0e-11 73.2 50 76.0
Ciclev10001463m.g Citrus clementina HOM05D001100 ORTHO05D001503 2.0e-11 73.2 51 74.5
Prupe.4G272000 Prunus persica HOM05D001100 ORTHO05D001503 2.0e-11 73.2 93 47.3
SalBow1G4172 Salvia bowleyana HOM05D001100 ORTHO05D001503 2.0e-11 73.2 50 74.0
BolC3t18496H Brassica oleracea HOM05D001100 ORTHO05D001503 2.6e-11 72.8 55 70.9
BraA06t26012Z Brassica rapa HOM05D001100 ORTHO05D001503 2.6e-11 72.8 55 70.9
Sed0005361 Sechium edule HOM05D001100 ORTHO05D001503 2.6e-11 72.8 50 74.0
TPR.G2929 Trifolium pratense HOM05D001100 ORTHO05D001503 2.6e-11 72.8 50 74.0
CANSAT01G0170 Cannabis sativa HOM05D001100 ORTHO05D001503 3.4e-11 72.4 50 76.0
ClCG01G015360 Citrullus lanatus HOM05D001100 ORTHO05D001503 3.4e-11 72.4 50 74.0
MELO3C008062.2 Cucumis melo HOM05D001100 ORTHO05D001503 3.4e-11 72.4 50 74.0
Oeu004238.1 Olea europaea HOM05D001100 ORTHO05D001503 3.4e-11 72.4 54 68.5
CARHR277900 Cardamine hirsuta HOM05D001100 ORTHO05D001503 4.4e-11 72.0 50 74.0
FAN19G1763 Fragaria x ananassa HOM05D001100 ORTHO05D001503 4.4e-11 72.0 50 74.0
RcHm_v2.0_Chr2g0121731 Rosa chinensis HOM05D001100 ORTHO05D001503 4.4e-11 72.0 50 74.0
Sc07g0001800 Simmondsia chinensis HOM05D001100 ORTHO05D001503 4.4e-11 72.0 94 48.9
SGA_v2.0_scaffold370G50110 Striga asiatica HOM05D001100 ORTHO05D001503 4.4e-11 72.0 50 72.0
arahy.Tifrunner.gnm1.ann1.LZ18QW Arachis hypogaea HOM05D001100 ORTHO05D001503 5.8e-11 71.6 50 74.0
arahy.Tifrunner.gnm1.ann1.Z42PVZ Arachis hypogaea HOM05D001100 ORTHO05D001503 5.8e-11 71.6 50 74.0
THA.LOC104800114 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 5.8e-11 71.6 50 74.0
AUR62003581 Chenopodium quinoa HOM05D001100 ORTHO05D001503 7.6e-11 71.2 81 54.3
Glyma.08G086800 Glycine max HOM05D001100 ORTHO05D001503 7.6e-11 71.2 50 72.0
Lsat_1_v5_gn_4_137741 Lactuca sativa HOM05D001100 ORTHO05D001503 7.6e-11 71.2 49 77.6
Lj4g0016822 Lotus japonicus HOM05D001100 ORTHO05D001503 7.6e-11 71.2 116 41.4
Nn5g28512 Nelumbo nucifera HOM05D001100 ORTHO05D001503 7.6e-11 71.2 50 72.0
AUR62017891 Chenopodium quinoa HOM05D001100 ORTHO05D001503 9.9e-11 70.9 50 74.0
Psat7g088480 Pisum sativum HOM05D001100 ORTHO05D001503 9.9e-11 70.9 50 72.0
Potri.007G105100 Populus trichocarpa HOM05D001100 ORTHO05D001503 9.9e-11 70.9 56 67.9
A06p21670 Brassica napus HOM05D001100 ORTHO05D001503 1.3e-10 70.5 46 78.3
CsaV3_6G041580 Cucumis sativus L. HOM05D001100 ORTHO05D001503 1.3e-10 70.5 49 73.5
FvH4_1g24470 Fragaria vesca HOM05D001100 ORTHO05D001503 1.3e-10 70.5 50 72.0
FAN28G0182 Fragaria x ananassa HOM05D001100 ORTHO05D001503 1.3e-10 70.5 50 74.0
MBI06_g27446_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D001503 1.3e-10 70.5 62 67.7
Sabra05G0053200 Salix brachista HOM05D001100 ORTHO05D001503 1.3e-10 70.5 50 72.0
unitig_899.g14679 Utricularia gibba HOM05D001100 ORTHO05D001503 1.3e-10 70.5 60 65.0
VMungo0251G2364 Vigna mungo HOM05D001100 ORTHO05D001503 1.3e-10 70.5 50 70.0
Atru.chr4.879 Acer truncatum HOM05D001100 ORTHO05D001503 1.7e-10 70.1 97 46.4
Eucgr.I00195 Eucalyptus grandis HOM05D001100 ORTHO05D001503 1.7e-10 70.1 50 70.0
Phvul.002G190600 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 1.7e-10 70.1 50 68.0
Hund04427 Selenicereus undatus HOM05D001100 ORTHO05D001503 1.7e-10 70.1 50 72.0
AUR62043727 Chenopodium quinoa HOM05D001100 ORTHO05D001503 2.2e-10 69.7 50 72.0
Glyma.05G132200 Glycine max HOM05D001100 ORTHO05D001503 2.2e-10 69.7 48 72.9
Cpa.g.sc42.165 Carica papaya HOM05D001100 ORTHO05D001503 2.9e-10 69.3 50 70.0
DCAR_001208 Daucus carota HOM05D001100 ORTHO05D001503 2.9e-10 69.3 71 57.7
FAN23G1742 Fragaria x ananassa HOM05D001100 ORTHO05D001503 2.9e-10 69.3 52 71.2
HanXRQChr09g0259741 Helianthus annuus HOM05D001100 ORTHO05D001503 2.9e-10 69.3 49 75.5
BraA06t25256Z Brassica rapa HOM05D001100 ORTHO05D001503 3.8e-10 68.9 46 76.1
SHI11462 Sapria himalayana HOM05D001100 ORTHO05D001503 3.8e-10 68.9 49 71.4
MSTRG.2644 Avicennia marina HOM05D001100 ORTHO05D001503 4.9e-10 68.6 50 66.0
Lalb_Chr07g0188391 Lupinus albus HOM05D001100 ORTHO05D001503 8.4e-10 67.8 49 71.4
Ca_18248_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 1.1e-09 67.4 49 69.4
SEGI_26343 Sequoiadendron giganteum HOM05D001100 ORTHO05D001503 1.1e-09 67.4 50 64.0
CDE04G3754 Ceratophyllum demersum HOM05D001100 ORTHO05D001503 1.4e-09 67.0 49 69.4
Thecc.01G134000 Theobroma cacao HOM05D001100 ORTHO05D001503 1.4e-09 67.0 50 72.0
COL.COLO4_35760 Corchorus olitorius HOM05D001100 ORTHO05D001503 1.9e-09 66.6 50 72.0
Gohir.A09G004400 Gossypium hirsutum HOM05D001100 ORTHO05D001503 1.9e-09 66.6 50 72.0
Gohir.D09G003900 Gossypium hirsutum HOM05D001100 ORTHO05D001503 1.9e-09 66.6 50 72.0
Gorai.006G005300 Gossypium raimondii HOM05D001100 ORTHO05D001503 1.9e-09 66.6 50 72.0
HPP92_005670 Vanilla planifolia HOM05D001100 ORTHO05D001503 1.9e-09 66.6 94 45.7
Gohir.A09G019900 Gossypium hirsutum HOM05D001100 ORTHO05D001503 2.4e-09 66.2 49 73.5
Gohir.D09G019500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 2.4e-09 66.2 49 73.5
Gorai.006G022900 Gossypium raimondii HOM05D001100 ORTHO05D001503 2.4e-09 66.2 49 73.5
Zm00001eb409060 Zea mays HOM05D001100 ORTHO05D001503 2.4e-09 66.2 50 62.0
A02p43100 Brassica napus HOM05D001100 ORTHO05D001503 3.2e-09 65.9 49 67.3
ATR0584G033 Amborella trichopoda HOM05D001100 ORTHO05D001503 5.4e-09 65.1 109 45.9
BcaC03g18236 Brassica carinata HOM05D001100 ORTHO05D001503 9.2e-09 64.3 49 63.3
AL6G19680 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 1.2e-08 63.9 50 66.0
C03p62340 Brassica napus HOM05D001100 ORTHO05D001503 1.2e-08 63.9 54 59.3
Os12g0183200 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D001503 1.2e-08 63.9 50 66.0
A06p30620 Brassica napus HOM05D001100 ORTHO05D001503 1.6e-08 63.5 54 59.3
BcaC01g02653 Brassica carinata HOM05D001100 ORTHO05D001503 2.1e-08 63.2 54 59.3
Duzib264G0434 Durio zibethinus HOM05D001100 ORTHO05D001503 2.1e-08 63.2 50 66.0
Sp2g27070 Schrenkiella parvula HOM05D001100 ORTHO05D001503 2.1e-08 63.2 50 64.0
AT5G09290 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 2.7e-08 62.8 50 64.0
CARHR277920 Cardamine hirsuta HOM05D001100 ORTHO05D001503 2.7e-08 62.8 50 64.0
AT5G64000 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 3.5e-08 62.4 50 64.0
C02p63070 Brassica napus HOM05D001100 ORTHO05D001503 3.5e-08 62.4 49 61.2
BolC2t12380H Brassica oleracea HOM05D001100 ORTHO05D001503 3.5e-08 62.4 49 61.2
Carub.0008s2478 Capsella rubella HOM05D001100 ORTHO05D001503 3.5e-08 62.4 50 64.0
Thhalv10004505m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 3.5e-08 62.4 50 62.0
Thhalv10013884m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 3.5e-08 62.4 50 62.0
BcaB07g29712 Brassica carinata HOM05D001100 ORTHO05D001503 4.6e-08 62.0 49 61.2
Duzib187G0114 Durio zibethinus HOM05D001100 ORTHO05D001503 4.6e-08 62.0 50 66.0
THA.LOC104818427 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 4.6e-08 62.0 50 62.0
A06p30610 Brassica napus HOM05D001100 ORTHO05D001503 7.8e-08 61.2 58 58.6
C03p62350 Brassica napus HOM05D001100 ORTHO05D001503 7.8e-08 61.2 58 58.6
Carub.0006s0784 Capsella rubella HOM05D001100 ORTHO05D001503 1.0e-07 60.8 50 62.0
CARHR204120 Cardamine hirsuta HOM05D001100 ORTHO05D001503 1.0e-07 60.8 50 60.0
CARHR277910 Cardamine hirsuta HOM05D001100 ORTHO05D001503 1.0e-07 60.8 58 58.6
Sp2g27060 Schrenkiella parvula HOM05D001100 ORTHO05D001503 1.3e-07 60.5 58 56.9
Thhalv10004421m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 1.7e-07 60.1 57 59.6
THA.LOC104819342 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 1.7e-07 60.1 55 60.0
AT5G63990 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 2.3e-07 59.7 55 60.0
AL8G41250 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 3.0e-07 59.3 55 60.0
Carub.0008s2477 Capsella rubella HOM05D001100 ORTHO05D001503 3.0e-07 59.3 58 58.6
SMO134G0102 Selaginella moellendorffii HOM05D001100 ORTHO05D001503 5.1e-07 58.5 63 49.2
QL10p043423 Quercus lobata HOM05D001100 ORTHO05D001503 6.6e-07 58.2 81 48.1
Gorai.011G119100 Gossypium raimondii HOM05D001100 ORTHO05D001503 1.5e-06 57.0 52 65.4
Gohir.A10G156800 Gossypium hirsutum HOM05D001100 ORTHO05D001503 1.9e-06 56.6 73 52.1
Gohir.D10G108800 Gossypium hirsutum HOM05D001100 ORTHO05D001503 1.9e-06 56.6 78 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3377 Anthoceros agrestis HOM05D001100 ORTHO05D001503 5.6e-06 55.1 50 58.0
Pp3c15_5590 Physcomitrium patens HOM05D001100 ORTHO05D001503 7.3e-06 54.7 49 57.1


User provided reference genes

Program Settings