Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.8e-265 917.9 578 100.0
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.3e-257 892.9 578 97.4
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.1e-255 885.6 578 96.4
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.3e-204 716.8 583 72.2
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 3.3e-200 702.2 508 85.8
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 5.3e-198 694.9 583 69.6
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 3.2e-171 605.9 585 63.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.5e-147 527.3 577 56.5
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 3.4e-144 516.2 589 52.6
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.9e-139 500.4 578 50.7
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 6.1e-138 495.4 589 48.6
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 3.7e-135 486.1 582 58.9
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 8.6e-132 474.9 577 49.2
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.0e-129 468.0 572 48.8
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-128 464.5 569 47.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.2e-127 460.3 580 47.9
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.2e-127 460.3 584 49.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.5e-125 453.0 572 49.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.8e-125 451.8 582 49.0
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.3e-124 451.1 573 47.6
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.3e-124 450.3 576 49.8
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 5.6e-123 445.7 572 45.6
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.6e-122 444.1 553 46.8
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.1e-122 443.7 582 46.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.1e-121 439.9 548 47.8
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.6e-120 436.8 571 46.9
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.3e-119 434.5 568 45.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.7e-119 434.1 575 52.9
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 3.7e-119 433.0 584 49.7
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 7.0e-118 428.7 589 44.5
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 9.2e-118 428.3 574 46.5
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 9.2e-118 428.3 576 51.2
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-116 424.9 581 44.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 3.0e-116 423.3 574 44.1
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.0e-116 423.3 539 44.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 8.1e-114 415.2 527 46.1
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.1e-113 414.8 584 45.2
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.6e-112 410.2 558 43.4
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 5.8e-112 409.1 565 54.3
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.5e-112 408.7 571 45.9
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.3e-111 407.9 575 48.3
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.1e-110 404.8 571 45.7
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.4e-110 404.4 552 43.5
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.4e-110 403.7 575 45.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.2e-110 403.3 571 45.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 3.2e-110 403.3 572 49.7
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 9.2e-110 401.7 561 43.9
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.1e-109 400.6 569 42.0
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 4.6e-109 399.4 577 44.4
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 7.8e-109 398.7 572 42.1
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 7.8e-109 398.7 554 44.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.7e-108 397.5 558 49.8
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.0e-108 396.7 638 41.5
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.1e-108 396.0 558 49.6
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.1e-107 394.8 559 41.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 5.6e-107 392.5 576 42.9
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 7.3e-107 392.1 576 41.1
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.2e-106 391.3 574 47.7
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.1e-106 390.6 558 41.6
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.8e-106 390.2 551 43.9
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 2.8e-106 390.2 586 42.7
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.8e-106 390.2 554 41.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.1e-105 388.3 554 41.7
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 3.1e-105 386.7 565 45.1
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.2e-104 384.8 573 41.0
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.6e-104 383.6 573 42.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.6e-104 383.6 564 41.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.6e-104 382.1 569 40.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.9e-104 381.7 553 47.4
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.9e-102 377.5 578 41.0
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.2e-101 374.8 575 40.2
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.6e-101 374.4 575 40.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 2.1e-101 374.0 579 42.1
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.6e-101 372.9 580 41.2
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.0e-100 371.7 598 44.1
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-98 364.8 581 41.5
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.6e-98 363.2 575 39.0
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 3.6e-98 363.2 562 39.1
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 6.2e-98 362.5 577 41.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.4e-97 361.3 578 41.0
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.4e-97 361.3 535 39.3
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 5.2e-97 359.4 571 39.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 5.8e-96 355.9 581 41.0
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 9.9e-96 355.1 582 41.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.2e-95 354.0 578 38.4
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.2e-95 354.0 578 38.4
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.2e-95 354.0 583 39.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 4.2e-94 349.7 567 38.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.1e-93 347.4 572 39.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.7e-93 347.1 532 40.6
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 3.5e-93 346.7 580 39.1
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 6.0e-93 345.9 545 37.6
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.3e-92 344.0 472 46.0
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 3.0e-92 343.6 571 37.5
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.6e-90 337.8 597 38.2
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.1e-90 335.5 469 46.3
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 5.3e-89 332.8 592 39.9
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.2e-88 331.6 536 37.5
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.2e-88 331.6 477 50.5
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.3e-87 328.2 580 39.1
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.2e-86 323.6 534 36.1
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 3.2e-86 323.6 460 42.0
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 4.2e-86 323.2 573 37.5
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 7.1e-86 322.4 571 35.7
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.6e-85 321.2 574 38.5
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.1e-85 320.9 575 35.5
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.0e-84 318.5 575 35.7
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.5e-83 314.7 575 35.3
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 4.3e-83 313.2 575 35.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 5.6e-83 312.8 575 35.0
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 2.1e-82 310.8 536 38.4
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 2.4e-81 307.4 575 33.9
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.5e-80 304.7 262 60.3
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 2.0e-80 304.3 571 34.5
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.2e-78 296.6 263 58.9
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.5e-75 288.1 562 36.8
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.6e-74 284.6 466 42.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.7e-71 274.6 257 53.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.9e-71 273.9 585 41.0
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 4.9e-71 273.1 598 35.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.6e-69 268.1 464 42.0
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.5e-69 266.9 387 38.8
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 4.6e-69 266.5 383 43.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.5e-67 261.5 428 37.9
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.4e-65 255.0 571 31.9
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-64 251.1 461 39.5
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 3.4e-64 250.4 554 37.5
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.8e-58 229.9 249 49.0
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.5e-55 219.2 294 44.9
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 9.7e-51 205.7 439 38.7
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.6e-45 188.3 230 51.3
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.7e-45 187.6 248 40.3
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.2e-42 177.9 414 28.5
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 1.1e-41 175.6 162 63.0
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 8.5e-39 166.0 153 58.2
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.1e-37 161.4 150 58.0
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.6e-37 160.6 150 57.3
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.1e-37 159.8 213 45.1
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 6.7e-36 156.4 537 28.9
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 2.7e-32 144.4 401 34.7
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-30 139.0 218 42.7
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 2.1e-29 134.8 158 42.4
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-25 122.1 143 43.4
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 5.4e-25 120.2 371 27.5
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.1e-25 119.4 112 53.6
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.2e-24 119.0 505 24.2
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 2.7e-24 117.9 563 22.2
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.7e-24 116.3 143 42.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.5e-22 109.4 95 57.9
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.2e-19 102.4 558 22.4
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.2e-19 102.4 172 37.8
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.4e-19 100.9 105 50.5
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.8e-18 97.8 133 42.9
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.9e-18 97.1 107 46.7
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-17 95.1 176 34.7
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.8e-17 95.1 589 21.6
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.7e-15 88.6 532 21.6
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.9e-15 87.8 83 55.4
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.8e-15 87.4 84 53.6
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 7.3e-14 83.2 135 34.1
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 9.5e-14 82.8 65 60.0
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 2.8e-13 81.3 128 35.2
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-12 79.3 120 45.0
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.8e-12 78.6 69 52.2
Solyc01g150163.1 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.8e-12 78.6 76 59.2
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 2.3e-12 78.2 178 27.5
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.0e-12 77.8 66 56.1
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 9.8e-11 72.8 56 69.6
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.3e-10 72.4 90 38.9
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 1.7e-10 72.0 79 46.8
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 3.7e-10 70.9 81 45.7
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.9e-10 70.5 146 32.2
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.2e-08 65.9 110 33.6
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.0e-08 65.1 580 19.5
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.7e-08 64.7 65 49.2
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.7e-08 64.7 65 49.2
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.5e-08 64.3 56 53.6
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.0e-08 63.5 458 20.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.0e-07 62.8 61 54.1
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.9e-06 58.5 55 54.5
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 5.6e-06 57.0 84 31.0


User provided reference genes

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