Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 3.2e-127 458.4 223 100.0
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.5e-68 263.5 226 67.7
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.6e-68 262.7 225 66.7
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 3.4e-68 262.3 224 65.6
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 7.5e-68 261.2 224 64.7
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 8.3e-67 257.7 222 65.3
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.8e-66 256.5 222 64.9
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.5e-63 246.9 222 60.8
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 5.2e-61 238.4 228 59.6
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 1.5e-60 236.9 227 59.0
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.4e-60 235.7 226 57.5
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 4.4e-60 235.3 225 59.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 2.2e-59 233.0 232 55.6
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 2.9e-59 232.6 228 56.1
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.9e-59 231.9 226 57.5
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.9e-58 229.9 227 52.9
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.9e-58 229.9 230 57.4
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.9e-58 229.9 230 57.4
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.9e-58 229.9 229 54.6
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 3.2e-58 229.2 228 53.1
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 4.1e-58 228.8 225 57.8
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 4.1e-58 228.8 246 56.1
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.0e-58 228.0 229 55.0
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 7.0e-58 228.0 229 55.0
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.6e-57 226.9 229 56.3
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 2.7e-57 226.1 228 52.6
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.3e-56 223.0 225 59.1
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 3.9e-56 222.2 230 53.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 5.0e-56 221.9 227 55.5
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 5.0e-56 221.9 227 55.9
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 8.6e-56 221.1 229 55.9
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.9e-55 219.9 226 55.8
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.5e-55 219.5 237 52.3
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 3.3e-55 219.2 228 57.0
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.6e-55 218.4 226 54.0
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 9.5e-55 217.6 226 55.8
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 9.5e-55 217.6 228 57.5
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.2e-54 217.2 235 53.2
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.2e-54 217.2 235 52.8
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.6e-54 216.9 226 55.8
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 2.1e-54 216.5 246 53.3
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 1.1e-53 214.2 233 52.8
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.8e-53 213.4 228 51.8
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.3e-53 213.0 225 53.8
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 2.3e-53 213.0 227 51.5
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 3.1e-53 212.6 152 74.3
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 6.8e-53 211.5 251 52.2
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 1.2e-52 210.7 209 58.9
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.2e-52 210.7 227 53.3
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.5e-52 210.3 196 61.2
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 2.0e-52 209.9 234 52.6
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 7.5e-52 208.0 230 51.3
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 7.5e-52 208.0 237 49.8
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 9.8e-52 207.6 230 51.7
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 9.8e-52 207.6 230 51.3
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 2.2e-51 206.5 222 51.8
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 3.7e-51 205.7 227 50.7
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.1e-50 204.1 239 50.6
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.9e-50 203.4 242 50.0
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 2.4e-50 203.0 225 51.1
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 2.4e-50 203.0 225 51.1
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 2.4e-50 203.0 203 56.2
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 3.2e-50 202.6 235 49.8
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 4.1e-50 202.2 228 53.1
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 4.1e-50 202.2 194 56.2
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 7.1e-50 201.4 204 52.9
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 9.2e-50 201.1 217 50.7
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.2e-49 200.7 213 55.4
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.6e-49 200.3 216 53.2
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 2.1e-49 199.9 224 54.0
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 2.1e-49 199.9 201 54.2
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.1e-49 199.9 245 49.8
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 3.5e-49 199.1 232 50.0
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.5e-49 199.1 250 48.8
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.5e-49 199.1 244 49.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 6.0e-49 198.4 234 47.9
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.0e-48 197.6 185 55.7
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.3e-48 197.2 243 49.8
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.7e-48 196.8 232 51.3
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.3e-48 196.4 230 50.0
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 3.9e-48 195.7 234 49.6
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.1e-48 195.3 241 49.8
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 8.6e-48 194.5 237 48.5
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 1.1e-47 194.1 230 50.9
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 3.3e-47 192.6 244 48.8
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 4.3e-47 192.2 261 47.1
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 4.3e-47 192.2 227 48.5
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 5.6e-47 191.8 197 53.3
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 5.6e-47 191.8 199 54.3
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 7.3e-47 191.4 222 52.7
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.2e-46 190.7 236 47.0
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.8e-46 189.5 220 50.5
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 3.6e-46 189.1 231 48.5
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 4.7e-46 188.7 230 47.8
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 4.7e-46 188.7 158 60.8
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 6.2e-46 188.3 201 52.2
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 6.2e-46 188.3 207 52.2
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 8.1e-46 188.0 190 51.6
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 1.4e-45 187.2 152 63.8
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 2.0e-44 183.3 237 47.3
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 3.4e-44 182.6 234 47.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 4.4e-44 182.2 187 54.5
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 7.6e-44 181.4 230 45.7
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 9.9e-44 181.0 230 47.8
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 1.7e-43 180.3 222 50.0
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 2.2e-43 179.9 206 51.9
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.9e-43 179.5 200 50.5
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 3.8e-43 179.1 192 49.5
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-42 177.6 191 52.4
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.4e-42 177.2 236 45.3
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.4e-42 177.2 191 52.4
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.4e-42 177.2 221 48.0
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 5.4e-42 175.3 240 43.8
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 5.4e-42 175.3 229 47.2
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.1e-42 174.9 203 49.8
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.2e-41 174.1 212 47.6
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.2e-41 174.1 225 49.3
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 1.6e-41 173.7 240 47.1
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 4.6e-41 172.2 226 44.2
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 6.0e-41 171.8 223 46.2
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-40 171.0 226 44.2
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 3.0e-40 169.5 226 45.6
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 5.1e-40 168.7 232 44.0
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 5.1e-40 168.7 184 55.4
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 5.1e-40 168.7 202 47.5
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.1e-39 167.5 193 47.2
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.8e-38 162.9 134 65.7
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 8.1e-38 161.4 131 63.4
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 1.1e-37 161.0 227 45.4
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 1.8e-37 160.2 170 50.6
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 3.1e-37 159.5 196 49.0
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 5.2e-37 158.7 205 47.8
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 8.9e-37 157.9 140 62.9
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.8e-36 155.2 226 44.2
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 8.4e-35 151.4 146 56.2
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 8.4e-35 151.4 143 58.0
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 7.8e-33 144.8 214 42.1
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 3.9e-32 142.5 210 42.4
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.6e-31 138.7 212 42.0
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 2.6e-28 129.8 130 51.5
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.8e-28 128.6 186 41.4
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 6.4e-27 125.2 172 47.1
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 4.3e-23 112.5 193 36.3
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.5e-20 104.0 161 43.5
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.1e-18 97.8 76 65.8
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 7.9e-17 91.7 191 37.7
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.8e-13 80.5 78 56.4
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 9.0e-13 78.2 59 64.4
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.3e-11 74.3 87 48.3
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 5.5e-10 68.9 57 57.9
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 9.3e-10 68.2 58 58.6
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.0e-08 63.2 50 58.0
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 3.9e-08 62.8 190 29.5
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.1e-07 61.2 56 53.6
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 1.5e-07 60.8 70 42.9


User provided reference genes

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