Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027921 Solanum tuberosum HOM05D024457 ORTHO05D398743 4.8e-202 707.6 353 100.0
Nitab4.5_0000401g0210 Nicotiana tabacum HOM05D000140 ORTHO05D000087 1.5e-30 137.9 213 43.7
Nitab4.5_0004347g0020 Nicotiana tabacum HOM05D000140 ORTHO05D000087 7.5e-30 135.6 213 40.8
Solyc09g092160.2 Solanum lycopersicum HOM05D000140 ORTHO05D000087 1.3e-29 134.8 213 43.2
PGSC0003DMG400026430 Solanum tuberosum HOM05D000140 ORTHO05D000087 2.9e-29 133.7 213 43.2
Sopen09g035040 Solanum pennellii HOM05D000140 ORTHO05D000087 4.9e-29 132.9 213 42.3
Peaxi162Scf00047g00226 Petunia axillaris HOM05D000140 ORTHO05D000087 1.4e-28 131.3 213 42.3
CAN.G1565.9 Capsicum annuum HOM05D000140 ORTHO05D000087 5.4e-28 129.4 219 40.6
Nitab4.5_0001652g0130 Nicotiana tabacum HOM05D000140 ORTHO05D000087 6.6e-26 122.5 213 41.3
CAN.G490.19 Capsicum annuum HOM05D000140 ORTHO05D000087 8.6e-26 122.1 213 40.4
PGSC0003DMG400007269 Solanum tuberosum HOM05D024457 ORTHO05D396696 5.8e-22 109.4 179 42.5
PGSC0003DMG400006094 Solanum tuberosum HOM05D024457 ORTHO05D037750 3.2e-20 103.6 184 38.6
Dinv27212 Davidia involucrata HOM05D000140 ORTHO05D000087 1.2e-19 101.7 223 33.2
Atru.chr4.1606 Acer truncatum HOM05D000140 ORTHO05D000087 1.6e-19 101.3 215 33.5
THA.LOC104801021 Tarenaya hassleriana HOM05D000140 ORTHO05D000087 3.5e-19 100.1 210 33.3
CiPaw.01G118300 Carya illinoinensis HOM05D000140 ORTHO05D000087 6.0e-19 99.4 215 34.4
AT2G32810 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 1.0e-18 98.6 210 32.9
BcaB06g28635 Brassica carinata HOM05D000140 ORTHO05D000087 1.3e-18 98.2 201 32.8
CSS0026801 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D000087 3.0e-18 97.1 215 30.2
MD13G1283100 Malus domestica HOM05D000140 ORTHO05D000087 3.0e-18 97.1 215 32.1
Carub.0004s1424 Capsella rubella HOM05D000140 ORTHO05D000087 3.9e-18 96.7 210 32.9
AL4G28310 Arabidopsis lyrata HOM05D000140 ORTHO05D000087 5.1e-18 96.3 210 32.9
C04p62370 Brassica napus HOM05D000140 ORTHO05D000087 8.6e-18 95.5 210 32.4
Oeu025027.2 Olea europaea HOM05D000140 ORTHO05D000087 8.6e-18 95.5 216 31.9
Cfa014949 Carpinus fangiana HOM05D000140 ORTHO05D000087 1.5e-17 94.7 216 32.9
RcHm_v2.0_Chr4g0414111 Rosa chinensis HOM05D000140 ORTHO05D000087 1.5e-17 94.7 213 32.4
BcaC02g07884 Brassica carinata HOM05D000140 ORTHO05D000087 1.9e-17 94.4 210 32.4
BolC4t27711H Brassica oleracea HOM05D000140 ORTHO05D000087 1.9e-17 94.4 210 32.4
Thhalv10016215m.g Eutrema salsugineum HOM05D000140 ORTHO05D000087 2.5e-17 94.0 210 31.9
Thecc.04G198500 Theobroma cacao HOM05D000140 ORTHO05D000087 3.3e-17 93.6 216 31.9
Aa31LG5G4480 Aethionema arabicum HOM05D000140 ORTHO05D000087 4.3e-17 93.2 210 31.9
Prupe.1G160600 Prunus persica HOM05D000140 ORTHO05D000087 4.3e-17 93.2 215 31.2
Sp4g15200 Schrenkiella parvula HOM05D000140 ORTHO05D000087 5.6e-17 92.8 210 31.4
A04p25310 Brassica napus HOM05D000140 ORTHO05D000087 1.6e-16 91.3 210 31.4
BraA04t18034Z Brassica rapa HOM05D000140 ORTHO05D000087 1.6e-16 91.3 210 31.4
Ciclev10004268m.g Citrus clementina HOM05D000140 ORTHO05D000087 6.2e-16 89.4 215 29.8
Cc03_g08300 Coffea canephora HOM05D000140 ORTHO05D000087 6.2e-16 89.4 214 29.9
Actinidia35852 Actinidia chinensis HOM05D000140 ORTHO05D000087 8.1e-16 89.0 223 29.1
CsaV3_3G010830 Cucumis sativus L. HOM05D000140 ORTHO05D000087 1.8e-15 87.8 225 28.9
HanXRQChr02g0059061 Helianthus annuus HOM05D000140 ORTHO05D000087 4.0e-15 86.7 220 30.5
Manes.15G055700 Manihot esculenta HOM05D000140 ORTHO05D000087 4.0e-15 86.7 215 28.8
ClCG05G003200 Citrullus lanatus HOM05D000140 ORTHO05D000087 5.2e-15 86.3 225 28.0
FAN17G0523 Fragaria x ananassa HOM05D000140 ORTHO05D000087 5.2e-15 86.3 211 30.3
vmacro00450 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 5.2e-15 86.3 206 30.1
FAN07G1342 Fragaria x ananassa HOM05D000140 ORTHO05D000087 6.8e-15 85.9 211 30.3
Lj6C393G5 Lonicera japonica HOM05D000140 ORTHO05D000087 8.9e-15 85.5 226 30.5
Gohir.A10G126700 Gossypium hirsutum HOM05D000140 ORTHO05D000087 3.4e-14 83.6 215 28.8
Sed0001485 Sechium edule HOM05D000140 ORTHO05D000087 3.4e-14 83.6 227 29.1
Gorai.011G155500 Gossypium raimondii HOM05D000140 ORTHO05D000087 4.4e-14 83.2 215 28.4
Migut.G00744 Erythranthe guttata HOM05D000140 ORTHO05D000087 5.8e-14 82.8 209 28.7
Gohir.D10G140000 Gossypium hirsutum HOM05D000140 ORTHO05D000087 7.6e-14 82.4 216 29.2
PGR142G3771 Punica granatum HOM05D000140 ORTHO05D000087 1.3e-13 81.6 218 30.7
Lsat_1_v5_gn_6_60680 Lactuca sativa HOM05D000140 ORTHO05D000087 1.7e-13 81.3 219 29.7
vmacro00451 Vaccinium macrocarpon HOM05D000140 ORTHO05D000087 1.7e-13 81.3 207 29.5
GSVIVG01020995001 Vitis vinifera HOM05D000140 ORTHO05D000087 1.7e-13 81.3 202 30.2
Duzib212G0855 Durio zibethinus HOM05D000140 ORTHO05D000087 2.9e-13 80.5 217 28.6
ECA233G5242 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.9e-13 80.5 218 29.4
DCAR_030816 Daucus carota HOM05D000140 ORTHO05D000087 3.8e-13 80.1 215 29.3
FvH4_4g13490 Fragaria vesca HOM05D000140 ORTHO05D000087 3.8e-13 80.1 209 29.2
FAN12G2000 Fragaria x ananassa HOM05D000140 ORTHO05D000087 3.8e-13 80.1 209 29.2
Manes.03G145400 Manihot esculenta HOM05D000140 ORTHO05D000087 3.8e-13 80.1 215 27.9
Rhsim09G0058800 Rhododendron simsii HOM05D000140 ORTHO05D000087 6.4e-13 79.3 157 29.9
TAR362G0239 Trochodendron aralioides HOM05D000140 ORTHO05D000087 8.4e-13 79.0 215 28.8
PSO017G5183 Papaver somniferum HOM05D000140 ORTHO05D000087 1.1e-12 78.6 228 31.6
ATR0069G046 Amborella trichopoda HOM05D000140 ORTHO05D000087 2.4e-12 77.4 214 31.8
Eucgr.H00038 Eucalyptus grandis HOM05D000140 ORTHO05D000087 2.4e-12 77.4 222 31.1
EL10Ac3g07472 Beta vulgaris HOM05D000140 ORTHO05D000087 7.1e-12 75.9 224 27.7
HanXRQChr07g0185491 Helianthus annuus HOM05D000140 ORTHO05D000087 9.2e-12 75.5 221 28.5
Nn3g20046 Nelumbo nucifera HOM05D000140 ORTHO05D000087 2.7e-11 73.9 210 26.7
SGA_v2.0_scaffold19G08766 Striga asiatica HOM05D000140 ORTHO05D000087 2.7e-11 73.9 208 25.5
MELO3C006301.2 Cucumis melo HOM05D000140 ORTHO05D000087 3.5e-11 73.6 214 27.1
Lj6A393G46 Lonicera japonica HOM05D000140 ORTHO05D000087 3.5e-11 73.6 166 30.1
CDE05G2366 Ceratophyllum demersum HOM05D000140 ORTHO05D000087 4.6e-11 73.2 210 26.7
Lalb_Chr12g0205561 Lupinus albus HOM05D000140 ORTHO05D000087 1.3e-10 71.6 217 28.6
MSTRG.9804 Avicennia marina HOM05D000140 ORTHO05D000087 1.5e-09 68.2 208 27.9
Sc19g0007060 Simmondsia chinensis HOM05D000140 ORTHO05D000087 2.5e-09 67.4 211 26.5
Sc19g0007340 Simmondsia chinensis HOM05D000140 ORTHO05D000087 2.5e-09 67.4 211 26.5
Os12g0429200 Oryza sativa ssp. japonica HOM05D000140 ORTHO05D000087 3.3e-09 67.0 219 26.5
AUR62018574 Chenopodium quinoa HOM05D000140 ORTHO05D000087 5.6e-09 66.2 219 23.7
Aqoxy2G03894 Aquilegia oxysepala HOM05D000140 ORTHO05D000087 3.6e-08 63.5 211 26.1
CARHR126750 Cardamine hirsuta HOM05D000140 ORTHO05D000087 3.6e-08 63.5 149 30.9
AUR62020842 Chenopodium quinoa HOM05D000140 ORTHO05D000087 8.1e-08 62.4 208 23.1
Cpa.g.sc83.27 Carica papaya HOM05D000140 ORTHO05D000087 4.0e-07 60.1 107 32.7
PGSC0003DMG400001695 Solanum tuberosum HOM05D012202 ORTHO05D013097 9.0e-07 58.9 55 56.4
PGSC0003DMG400024489 Solanum tuberosum HOM05D012202 ORTHO05D013097 9.0e-07 58.9 55 56.4
DCAR_030814 Daucus carota HOM05D000140 ORTHO05D000087 7.6e-06 55.8 174 25.9


User provided reference genes

Program Settings