Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026198 Solanum tuberosum HOM05D000404 ORTHO05D397055 2.6e-35 151.4 69 100.0
PGSC0003DMG400026199 Solanum tuberosum HOM05D000404 ORTHO05D005114 2.4e-33 144.8 69 95.7
Solyc07g052690.4 Solanum lycopersicum HOM05D000404 ORTHO05D005114 2.7e-32 141.4 69 91.3
Sopen07g026320 Solanum pennellii HOM05D000404 ORTHO05D005114 2.7e-32 141.4 69 91.3
Nitab4.5_0002949g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005114 1.1e-30 136.0 69 89.9
Nitab4.5_0004036g0040 Nicotiana tabacum HOM05D000404 ORTHO05D005114 1.5e-30 135.6 69 89.9
CAN.G86.15 Capsicum annuum HOM05D000404 ORTHO05D005114 1.2e-29 132.5 69 89.9
Peaxi162Scf00007g01343 Petunia axillaris HOM05D000404 ORTHO05D005114 1.7e-26 122.1 69 76.8
Oeu011069.1 Olea europaea HOM05D000404 ORTHO05D005114 9.6e-14 79.7 65 60.0
MSTRG.14842 Avicennia marina HOM05D000404 ORTHO05D005114 1.2e-11 72.8 65 50.8
Migut.M00386 Erythranthe guttata HOM05D000404 ORTHO05D005114 2.6e-11 71.6 65 47.7
Haze_12938 Corylus avellana HOM05D000404 ORTHO05D005114 3.4e-11 71.2 68 48.5
Cfa014451 Carpinus fangiana HOM05D000404 ORTHO05D005114 4.5e-11 70.9 68 47.1
DCAR_021196 Daucus carota HOM05D000404 ORTHO05D005114 7.6e-11 70.1 66 43.9
PGR042G3951 Punica granatum HOM05D000404 ORTHO05D005114 1.3e-10 69.3 63 52.4
Eucgr.A01734 Eucalyptus grandis HOM05D000404 ORTHO05D005114 1.7e-10 68.9 67 44.8
Lj1A754T69 Lonicera japonica HOM05D000404 ORTHO05D005114 2.9e-10 68.2 62 50.0
Oeu011070.1 Olea europaea HOM05D000404 ORTHO05D005114 2.9e-10 68.2 50 60.0
Actinidia30504 Actinidia chinensis HOM05D000404 ORTHO05D005114 3.8e-10 67.8 62 51.6
THA.LOC104800979 Tarenaya hassleriana HOM05D000404 ORTHO05D005114 1.4e-09 65.9 74 44.6
Dinv10907 Davidia involucrata HOM05D000404 ORTHO05D005114 1.9e-09 65.5 67 46.3
MD09G1103800 Malus domestica HOM05D000404 ORTHO05D005114 1.9e-09 65.5 53 56.6
Ciclev10014929m.g Citrus clementina HOM05D000404 ORTHO05D005114 4.2e-09 64.3 54 53.7
SGA_v2.0_scaffold34G13877 Striga asiatica HOM05D000404 ORTHO05D005114 5.4e-09 63.9 64 46.9
ClCG02G001600 Citrullus lanatus HOM05D000404 ORTHO05D005114 7.1e-09 63.5 65 49.2
Rhsim04G0057100 Rhododendron simsii HOM05D000404 ORTHO05D005114 7.1e-09 63.5 67 43.3
CsaV3_7G003840 Cucumis sativus L. HOM05D000404 ORTHO05D005114 1.2e-08 62.8 68 45.6
vmacro09321 Vaccinium macrocarpon HOM05D000404 ORTHO05D005114 1.2e-08 62.8 67 43.3
Zm00001eb106420 Zea mays HOM05D000404 ORTHO05D005114 1.2e-08 62.8 67 50.7
Aqoxy4G02126 Aquilegia oxysepala HOM05D000404 ORTHO05D005114 1.6e-08 62.4 68 44.1
CiPaw.03G163800 Carya illinoinensis HOM05D000404 ORTHO05D005114 1.6e-08 62.4 62 45.2
COL.COLO4_13004 Corchorus olitorius HOM05D000404 ORTHO05D005114 1.6e-08 62.4 56 51.8
QL08p034014 Quercus lobata HOM05D000404 ORTHO05D005114 1.6e-08 62.4 68 44.1
Hma1.2p1_0613F.1_g189360 Hydrangea macrophylla HOM05D000404 ORTHO05D005114 2.1e-08 62.0 66 43.9
Lsat_1_v5_gn_8_129860 Lactuca sativa HOM05D000404 ORTHO05D005114 3.5e-08 61.2 65 44.6
MBI18_g28069_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005114 4.6e-08 60.8 69 43.5
MD17G1091600 Malus domestica HOM05D000404 ORTHO05D005114 4.6e-08 60.8 53 52.8
FAN02G2921 Fragaria x ananassa HOM05D000404 ORTHO05D005114 6.0e-08 60.5 53 52.8
Nn1g06960 Nelumbo nucifera HOM05D000404 ORTHO05D005114 6.0e-08 60.5 66 42.4
Sabra17G0027600 Salix brachista HOM05D000404 ORTHO05D005114 6.0e-08 60.5 50 54.0
SalBow7G3558 Salvia bowleyana HOM05D000404 ORTHO05D005114 6.0e-08 60.5 65 41.5
Thecc.05G209100 Theobroma cacao HOM05D000404 ORTHO05D005114 6.0e-08 60.5 53 49.1
Atru.chr6.3128 Acer truncatum HOM05D000404 ORTHO05D005114 7.9e-08 60.1 68 44.1
Prupe.3G221800 Prunus persica HOM05D000404 ORTHO05D005114 7.9e-08 60.1 57 49.1
Sed0021129 Sechium edule HOM05D000404 ORTHO05D005114 1.0e-07 59.7 68 42.6
CSS0011170 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005114 1.3e-07 59.3 67 41.8
CSS0043460 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005114 1.3e-07 59.3 67 41.8
FvH4_6g43670 Fragaria vesca HOM05D000404 ORTHO05D005114 1.8e-07 58.9 53 50.9
FAN14G2352 Fragaria x ananassa HOM05D000404 ORTHO05D005114 1.8e-07 58.9 53 50.9
RcHm_v2.0_Chr2g0160291 Rosa chinensis HOM05D000404 ORTHO05D005114 1.8e-07 58.9 55 49.1
TAR629G1170 Trochodendron aralioides HOM05D000404 ORTHO05D005114 1.8e-07 58.9 53 50.9
ECA233G5920 Erigeron canadensis HOM05D000404 ORTHO05D005114 2.3e-07 58.5 65 43.1
FAN09G4638 Fragaria x ananassa HOM05D000404 ORTHO05D020501 2.3e-07 58.5 53 50.9
Gorai.005G208900 Gossypium raimondii HOM05D000404 ORTHO05D005114 2.3e-07 58.5 56 46.4
HanXRQChr17g0563781 Helianthus annuus HOM05D000404 ORTHO05D005114 2.3e-07 58.5 65 44.6
PSO541G1039 Papaver somniferum HOM05D000404 ORTHO05D005114 2.3e-07 58.5 74 43.2
arahy.Tifrunner.gnm1.ann1.Y6Z03A Arachis hypogaea HOM05D000404 ORTHO05D005114 3.0e-07 58.2 54 50.0
Duzib106G1423 Durio zibethinus HOM05D000404 ORTHO05D005114 3.0e-07 58.2 53 49.1
Lj1A754T66 Lonicera japonica HOM05D000404 ORTHO05D005114 3.9e-07 57.8 52 48.1
FAN05G5361 Fragaria x ananassa HOM05D000404 ORTHO05D020501 5.1e-07 57.4 53 50.9
Manes.12G078500 Manihot esculenta HOM05D000404 ORTHO05D005114 5.1e-07 57.4 53 49.1
Gohir.A03G163200 Gossypium hirsutum HOM05D000404 ORTHO05D005114 6.7e-07 57.0 56 44.6
Gohir.A11G303766 Gossypium hirsutum HOM05D000404 ORTHO05D005114 6.7e-07 57.0 53 49.1
Lj1C754T6 Lonicera japonica HOM05D000404 ORTHO05D005114 6.7e-07 57.0 49 49.0
arahy.Tifrunner.gnm1.ann1.C3I2PC Arachis hypogaea HOM05D000404 ORTHO05D005114 8.7e-07 56.6 54 48.1
Cc05_g06110 Coffea canephora HOM05D000404 ORTHO05D005114 8.7e-07 56.6 52 51.9
Medtr2g089030 Medicago truncatula HOM05D000404 ORTHO05D005114 1.1e-06 56.2 62 41.9
Glyma.13G305300 Glycine max HOM05D000404 ORTHO05D005114 1.5e-06 55.8 53 45.3
Gohir.D02G186600 Gossypium hirsutum HOM05D000404 ORTHO05D005114 1.5e-06 55.8 56 44.6
TWI36G1237 Tripterygium wilfordii HOM05D000404 ORTHO05D005114 1.5e-06 55.8 50 54.0
AUR62017626 Chenopodium quinoa HOM05D000404 ORTHO05D005114 1.9e-06 55.5 60 45.0
Os07g0543100 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005114 1.9e-06 55.5 67 43.3
Psat5g265560 Pisum sativum HOM05D000404 ORTHO05D005114 1.9e-06 55.5 53 49.1
AUR62015174 Chenopodium quinoa HOM05D000404 ORTHO05D005114 2.5e-06 55.1 60 43.3
Potri.017G040800 Populus trichocarpa HOM05D000404 ORTHO05D005114 2.5e-06 55.1 50 50.0
GSVIVG01030642001 Vitis vinifera HOM05D000404 ORTHO05D005114 2.5e-06 55.1 54 46.3
Gohir.D11G319200 Gossypium hirsutum HOM05D000404 ORTHO05D005114 3.3e-06 54.7 53 47.2
Gorai.007G349200 Gossypium raimondii HOM05D000404 ORTHO05D005114 3.3e-06 54.7 53 47.2
TPR.G30795 Trifolium pratense HOM05D000404 ORTHO05D005114 4.3e-06 54.3 53 47.2
Dinv18539 Davidia involucrata HOM05D000404 ORTHO05D005114 5.6e-06 53.9 53 50.9
Zm00001eb323450 Zea mays HOM05D000404 ORTHO05D005114 5.6e-06 53.9 47 53.2
TAR625G0753 Trochodendron aralioides HOM05D000404 ORTHO05D020501 7.4e-06 53.5 53 47.2
Psat7g197880 Pisum sativum HOM05D000404 ORTHO05D005114 9.6e-06 53.1 53 47.2
TAR636G1924 Trochodendron aralioides HOM05D000404 ORTHO05D020501 9.6e-06 53.1 54 46.3


User provided reference genes

Program Settings