Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1711.0 981 100.0
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1640.6 990 90.4
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1516.5 987 83.3
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1505.7 987 82.6
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 0.0e+00 1444.5 825 92.4
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1423.7 995 78.8
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1159.4 982 66.2
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1143.6 981 63.6
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1140.9 982 65.2
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1138.6 990 63.1
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1134.0 977 63.8
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1133.2 981 65.6
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1128.6 979 64.5
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1126.3 971 63.3
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1123.6 982 61.0
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 0.0e+00 1117.8 1029 61.4
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1110.5 969 63.3
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1110.5 980 67.0
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1109.4 970 63.4
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1109.0 977 63.4
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1105.5 971 67.7
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1102.8 982 61.8
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1097.8 967 68.1
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1097.4 968 62.5
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1097.0 975 67.3
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1095.5 889 72.3
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 0.0e+00 1091.3 981 62.2
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 0.0e+00 1090.9 991 62.1
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1088.6 981 67.2
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1087.0 965 68.6
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1084.7 1005 59.7
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 968 67.3
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1080.1 962 66.3
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1080.1 1046 58.8
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1077.0 960 67.4
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 1.3e-311 1072.8 979 61.5
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 1.0e-310 1070.1 966 61.8
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 3.0e-310 1068.5 967 61.7
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 6.6e-310 1067.4 997 60.0
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 8.7e-310 1067.0 963 65.8
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 1.3e-308 1063.1 965 61.3
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 2.8e-308 1062.0 987 59.1
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 6.9e-307 1057.4 965 60.5
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 2.6e-306 1055.4 979 58.7
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.7e-305 1052.7 962 64.8
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 4.2e-304 1048.1 975 64.9
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 1.2e-303 1046.6 923 65.3
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 2.7e-303 1045.4 981 64.0
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 2.7e-303 1045.4 994 63.6
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 3.5e-303 1045.0 970 64.0
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 4.6e-303 1044.6 965 60.0
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 4.6e-303 1044.6 898 68.4
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 1.0e-302 1043.5 909 67.7
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 6.6e-302 1040.8 929 67.7
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 1.1e-301 1040.0 964 64.9
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 3.6e-300 1035.0 970 64.4
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 6.2e-300 1034.2 970 64.0
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 8.1e-300 1033.9 977 64.0
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 1.4e-299 1033.1 975 57.4
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 3.1e-299 1031.9 842 64.8
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 3.1e-299 1031.9 969 58.3
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 6.9e-299 1030.8 971 63.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 6.9e-299 1030.8 971 63.9
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 6.9e-299 1030.8 998 58.1
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.8e-298 1027.7 892 67.6
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 1.2e-295 1020.0 890 62.7
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.6e-295 1019.6 997 57.8
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 2.1e-295 1019.2 969 63.8
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.7e-295 1018.8 1009 57.4
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 7.9e-295 1017.3 827 65.5
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 8.7e-294 1013.8 978 57.7
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 5.5e-288 994.6 891 66.3
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 3.0e-286 988.8 968 56.4
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 6.7e-286 987.6 963 57.4
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 8.2e-284 980.7 907 64.6
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 1.8e-283 979.5 932 63.2
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 1.2e-282 976.9 980 59.4
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 4.5e-282 974.9 983 54.6
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.1e-280 970.3 891 64.8
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 3.9e-278 961.8 983 56.0
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.3e-260 903.7 991 57.5
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 2.8e-260 902.5 1006 52.4
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 1.7e-257 893.3 975 52.3
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 5.0e-257 891.7 835 64.6
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.2e-255 887.1 972 57.4
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 7.7e-250 867.8 969 58.1
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.0e-249 867.5 970 57.6
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 1.0e-249 867.5 970 57.6
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 6.5e-249 864.8 972 56.7
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 7.2e-248 861.3 906 57.4
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 2.1e-247 859.8 873 60.9
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 1.4e-246 857.1 825 63.0
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 6.8e-246 854.7 825 62.9
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 2.0e-245 853.2 824 62.9
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 2.6e-245 852.8 825 62.9
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 3.4e-245 852.4 974 56.5
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 7.5e-245 851.3 976 56.2
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 3.7e-244 849.0 976 50.5
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 2.7e-242 842.8 1003 49.5
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 7.8e-218 761.5 888 51.5
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 5.4e-211 738.8 1002 47.6
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.1e-208 731.1 773 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 2.9e-180 636.7 995 43.1
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 7.1e-171 605.5 838 50.0
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 1.1e-160 571.6 601 58.1
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 7.4e-160 568.9 821 49.2
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 3.5e-133 480.3 509 55.6
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 2.5e-131 474.2 643 43.4
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 4.5e-125 453.4 482 54.4
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 5.4e-118 429.9 805 35.5
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 4.3e-91 340.5 852 32.2
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 1.7e-87 328.6 537 43.8
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 5.6e-83 313.5 953 29.2
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 9.9e-72 276.2 323 53.9
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 9.6e-59 233.0 871 24.0
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 9.6e-59 233.0 172 70.3
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 4.2e-54 217.6 216 52.8
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 2.1e-50 205.3 221 48.9
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.3e-25 120.9 67 82.1
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 4.5e-24 117.9 80 70.0
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 1.6e-21 109.4 116 53.4
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 2.6e-19 102.1 90 56.7
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 1.3e-18 99.8 90 55.6
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 1.8e-17 95.9 67 68.7
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 9.1e-17 93.6 102 52.9
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 3.5e-16 91.7 90 55.6
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.9e-14 85.9 158 37.3
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 6.1e-13 80.9 391 24.8
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 2.3e-12 79.0 207 34.8
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 9.1e-09 67.0 42 71.4


User provided reference genes

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