Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 4.3e-211 737.6 354 100.0
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 3.2e-182 641.7 426 76.1
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 3.4e-179 631.7 426 74.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 3.7e-170 601.7 426 70.0
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.6e-144 516.5 427 63.2
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.4e-137 493.4 442 59.5
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 2.5e-126 456.1 421 54.6
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.3e-125 453.8 418 54.1
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 3.6e-125 452.2 421 53.7
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.1e-124 450.7 421 53.2
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 2.4e-124 449.5 421 52.7
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 4.0e-124 448.7 418 53.6
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 6.9e-124 448.0 421 53.0
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 9.0e-124 447.6 421 53.2
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 9.0e-124 447.6 421 52.7
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.2e-123 447.2 418 54.3
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.2e-123 447.2 421 53.0
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 1.5e-123 446.8 421 52.7
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 2.0e-123 446.4 418 52.6
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.6e-123 446.0 421 53.4
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 2.6e-123 446.0 421 52.3
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 3.4e-123 445.7 421 53.0
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 5.8e-123 444.9 421 52.0
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.7e-122 443.4 418 52.6
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 2.2e-122 443.0 445 51.2
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 6.4e-122 441.4 421 52.5
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.1e-121 440.7 421 52.0
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 1.1e-121 440.7 421 53.7
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.4e-121 440.3 418 53.6
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 1.9e-121 439.9 418 53.3
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.9e-121 439.9 421 51.8
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.4e-121 439.5 418 52.4
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 3.2e-121 439.1 421 51.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 4.2e-121 438.7 418 52.2
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 5.4e-121 438.3 418 51.7
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 5.4e-121 438.3 423 52.2
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 5.4e-121 438.3 422 51.4
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 7.1e-121 438.0 418 52.2
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 9.3e-121 437.6 421 52.5
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.6e-120 436.8 422 51.4
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 1.6e-120 436.8 393 56.0
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 2.1e-120 436.4 418 52.2
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 7.9e-120 434.5 421 52.0
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.3e-119 433.7 421 53.0
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.8e-119 433.3 414 52.9
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 2.3e-119 433.0 393 56.0
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 3.0e-119 432.6 418 52.4
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 5.1e-119 431.8 421 52.3
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 6.7e-119 431.4 421 51.5
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.5e-118 429.5 421 52.0
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 2.5e-118 429.5 418 51.4
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 4.3e-118 428.7 428 50.7
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 4.3e-118 428.7 421 51.8
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.3e-118 428.7 421 51.8
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 5.6e-118 428.3 421 50.6
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 5.6e-118 428.3 418 51.0
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.3e-117 427.2 421 51.5
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 1.6e-117 426.8 421 51.3
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 2.8e-117 426.0 421 51.3
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 6.2e-117 424.9 418 51.9
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.4e-116 423.7 418 51.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.4e-116 422.9 421 50.8
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.1e-116 422.5 418 51.2
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 5.3e-116 421.8 418 51.4
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 9.0e-116 421.0 421 50.1
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.2e-115 420.6 421 50.6
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 1.5e-115 420.2 421 49.9
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.5e-115 420.2 421 50.4
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 2.6e-115 419.5 499 45.5
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.4e-115 419.1 441 49.2
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 5.8e-115 418.3 441 49.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 5.8e-115 418.3 418 49.3
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 7.6e-115 417.9 418 50.7
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 9.9e-115 417.5 418 50.2
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 1.3e-114 417.2 422 50.0
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.9e-114 416.0 421 49.9
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 4.9e-114 415.2 418 50.2
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 8.4e-114 414.5 421 49.6
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.4e-113 413.7 420 50.2
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 2.4e-113 412.9 421 49.4
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.6e-112 410.2 495 44.6
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 2.1e-112 409.8 441 50.1
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.7e-112 409.5 403 52.4
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 1.0e-111 407.5 438 47.7
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.0e-111 407.5 421 48.7
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 1.3e-111 407.1 421 48.9
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 2.3e-111 406.4 421 48.5
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 2.3e-111 406.4 421 48.2
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 5.1e-111 405.2 421 48.2
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 5.1e-111 405.2 418 48.6
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 1.1e-110 404.1 421 49.2
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.5e-110 403.7 421 47.7
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 2.5e-110 402.9 421 48.0
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 2.5e-110 402.9 418 48.3
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 2.5e-110 402.9 421 49.9
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 3.3e-110 402.5 412 51.2
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.3e-110 402.1 421 49.4
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 5.6e-110 401.7 418 47.6
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 5.6e-110 401.7 527 43.3
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.6e-109 400.2 421 47.5
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.1e-108 397.5 400 50.8
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 1.4e-108 397.1 395 49.6
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.2e-107 394.0 395 51.6
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.5e-107 393.7 421 48.0
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.5e-107 393.7 421 48.0
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.6e-107 392.9 421 48.0
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 4.5e-107 392.1 421 48.0
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 6.5e-106 388.3 421 47.5
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.1e-105 387.5 421 47.5
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.6e-104 383.6 407 49.1
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 4.6e-104 382.1 422 47.6
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 1.0e-103 380.9 439 44.9
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.0e-103 380.9 541 41.8
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 3.3e-102 375.9 422 47.2
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.6e-101 373.6 419 47.5
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 5.1e-95 352.1 419 44.9
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 7.4e-94 348.2 341 51.9
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.7e-93 347.1 421 42.5
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 2.6e-91 339.7 395 45.3
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.0e-79 301.2 300 51.3
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.0e-75 287.0 308 48.4
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 2.6e-75 286.6 326 46.3
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.1e-73 281.2 418 38.5
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 3.6e-72 276.2 305 47.9
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 1.3e-58 231.1 147 69.4
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.9e-58 229.9 266 44.4
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 6.1e-56 222.2 149 65.8
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 4.0e-55 219.5 208 54.8
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.5e-54 217.6 444 30.9
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 4.9e-53 212.6 148 66.9
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.0e-52 208.8 248 44.8
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 2.4e-44 183.7 148 57.4
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 6.6e-42 175.6 143 60.8
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-40 170.2 166 49.4
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 2.6e-38 163.7 98 74.5
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 9.8e-38 161.8 170 46.5
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.7e-34 151.0 93 71.0
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.8e-31 141.0 112 59.8
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 2.2e-29 134.0 138 50.0
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.9e-25 120.9 117 54.7
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 4.3e-25 119.8 214 33.6
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 2.4e-23 114.0 76 69.7
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.2e-20 103.2 95 57.9
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 8.1e-16 89.0 139 40.3
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 3.8e-13 80.1 112 47.3
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 2.8e-08 63.9 54 55.6


User provided reference genes

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