Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.3e-138 493.8 236 100.0
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.3e-82 308.9 303 56.1
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 4.3e-82 308.5 302 56.0
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 7.4e-82 307.8 302 55.6
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 7.4e-82 307.8 305 55.7
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 9.7e-82 307.4 302 55.6
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 9.7e-82 307.4 302 55.6
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 3.8e-78 295.4 260 62.3
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 2.7e-76 289.3 305 53.1
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 3.0e-75 285.8 289 54.3
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.8e-73 278.5 305 52.1
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.4e-72 276.9 305 51.8
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 5.3e-72 275.0 141 93.6
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 5.5e-69 265.0 304 50.0
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.6e-58 229.6 293 47.8
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.0e-54 217.6 287 45.3
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.7e-52 208.8 201 51.2
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.2e-51 205.3 307 38.8
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.2e-51 205.3 307 38.8
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.7e-47 193.0 258 43.4
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 7.7e-47 191.4 309 39.8
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.0e-43 179.5 306 36.9
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.4e-42 176.0 306 35.6
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 7.5e-42 174.9 303 37.3
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 3.7e-41 172.6 306 35.9
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 8.3e-41 171.4 303 35.6
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 1.1e-40 171.0 306 36.3
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-40 170.6 312 35.6
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 1.4e-40 170.6 297 36.7
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.4e-40 169.9 302 35.4
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 4.1e-40 169.1 306 34.0
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 4.1e-40 169.1 312 35.3
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.0e-40 168.3 306 34.3
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 9.1e-40 167.9 301 34.9
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 1.2e-39 167.5 309 35.9
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.2e-39 167.5 302 34.1
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.2e-39 167.5 309 36.2
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-39 167.5 297 35.4
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.2e-39 167.5 309 34.6
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.6e-39 167.2 297 35.4
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.6e-39 167.2 307 35.2
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.6e-39 167.2 268 37.7
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.0e-39 166.8 302 35.1
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.7e-39 166.4 309 35.9
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.7e-39 166.4 306 34.6
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.7e-39 166.4 309 33.7
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 3.5e-39 166.0 309 35.3
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 4.5e-39 165.6 300 35.7
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 4.5e-39 165.6 309 35.6
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.5e-39 165.6 306 36.6
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 5.9e-39 165.2 307 34.2
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 7.7e-39 164.9 308 33.8
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.0e-38 164.5 307 34.9
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.3e-38 164.1 301 32.9
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.3e-38 163.3 309 34.3
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 5.0e-38 162.2 293 35.5
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 6.6e-38 161.8 300 33.0
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 6.6e-38 161.8 301 35.5
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 6.6e-38 161.8 146 52.7
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 8.6e-38 161.4 307 32.9
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 2.5e-37 159.8 305 32.5
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 3.3e-37 159.5 302 35.1
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.6e-37 158.7 302 34.8
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 9.5e-37 157.9 307 33.6
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 9.5e-37 157.9 307 33.2
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.2e-36 157.5 303 32.7
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.6e-36 157.1 308 34.4
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.1e-36 156.8 293 34.5
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 2.1e-36 156.8 302 34.1
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.6e-36 156.0 303 34.3
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 3.6e-36 156.0 295 34.2
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 4.7e-36 155.6 303 32.7
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 4.7e-36 155.6 304 31.9
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 6.1e-36 155.2 131 55.0
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 8.0e-36 154.8 301 32.9
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 8.0e-36 154.8 298 33.2
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.0e-35 154.5 304 32.9
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.0e-35 154.5 305 33.1
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.8e-35 153.7 302 33.8
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 2.3e-35 153.3 302 33.8
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.3e-35 153.3 309 31.7
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.3e-35 153.3 142 51.4
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 3.0e-35 152.9 298 32.9
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.0e-35 152.5 303 33.0
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 4.0e-35 152.5 302 33.1
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.8e-35 151.8 299 34.4
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 8.9e-35 151.4 308 31.8
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 8.9e-35 151.4 308 31.8
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.0e-34 150.2 318 31.1
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 2.0e-34 150.2 321 34.6
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 2.6e-34 149.8 305 32.1
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 3.4e-34 149.4 303 33.7
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.4e-34 149.1 307 33.6
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.7e-34 148.7 301 33.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.7e-34 148.7 301 33.2
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 9.8e-34 147.9 299 33.8
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.3e-33 147.5 299 33.8
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 2.9e-33 146.4 295 32.2
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.4e-33 145.2 303 32.3
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 6.4e-33 145.2 324 33.3
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 8.3e-33 144.8 307 32.6
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.1e-32 144.4 284 33.1
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-32 144.1 307 34.2
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.8e-32 143.7 311 33.8
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.4e-32 143.3 302 32.5
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 4.1e-32 142.5 313 33.9
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.1e-32 142.5 311 33.4
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.4e-32 142.1 295 32.5
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 7.0e-32 141.7 310 32.6
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 9.2e-32 141.4 321 32.1
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.6e-31 140.6 299 33.1
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.6e-31 140.6 321 31.5
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.6e-31 140.6 304 32.6
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.0e-31 140.2 306 31.0
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.6e-31 139.0 299 33.1
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.6e-31 139.0 325 32.9
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.0e-30 137.9 314 32.8
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.3e-30 137.5 304 31.9
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.7e-30 137.1 295 32.5
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 1.7e-30 137.1 310 31.9
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.9e-30 136.0 302 31.8
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 3.9e-30 136.0 293 31.7
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.6e-30 135.2 310 29.0
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 8.6e-30 134.8 310 31.9
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-29 134.0 307 32.9
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.5e-29 134.0 282 33.7
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.3e-29 132.9 282 31.6
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 4.3e-29 132.5 286 30.8
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.1e-28 130.2 302 30.8
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 3.6e-28 129.4 308 30.2
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.6e-28 129.4 308 32.1
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.0e-27 127.9 293 30.7
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.4e-27 127.5 152 45.4
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 5.2e-27 125.6 299 31.8
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 5.2e-27 125.6 244 34.4
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 2.0e-26 123.6 308 31.2
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 4.4e-26 122.5 130 45.4
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 7.5e-26 121.7 304 29.9
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 4.9e-25 119.0 265 31.3
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 4.9e-25 119.0 301 31.2
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.3e-25 118.2 294 31.0
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.9e-24 117.1 140 45.0
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-23 114.0 140 45.0
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.9e-21 107.1 300 28.0
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.3e-21 105.9 222 32.4
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.2e-20 104.4 270 27.8
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 1.4e-19 100.9 147 38.1
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.5e-18 97.4 140 38.6
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 9.8e-18 94.7 299 28.1
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-17 93.2 203 31.0
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 3.7e-17 92.8 173 31.8
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.1e-16 91.3 134 39.6
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.1e-16 91.3 110 43.6
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 2.4e-16 90.1 78 57.7
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 4.1e-16 89.4 309 25.9
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 2.1e-15 87.0 177 35.0
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.7e-14 84.0 71 59.2
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.0e-14 83.2 214 29.4
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.9e-10 68.2 62 51.6
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.7e-09 67.4 50 62.0
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 6.4e-09 65.5 45 66.7
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.4e-08 64.3 52 59.6
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 3.9e-06 56.2 54 46.3
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 6.6e-06 55.5 38 60.5


User provided reference genes

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