Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.4e-39 164.5 80 100.0
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.9e-37 158.7 80 95.0
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.7e-30 135.6 77 85.7
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 1.7e-30 135.6 77 85.7
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 8.8e-27 123.2 77 77.9
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.7e-25 119.0 77 74.0
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 6.9e-24 113.6 77 71.4
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.4e-21 105.9 77 61.0
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 2.7e-20 101.7 77 59.7
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 2.3e-19 98.6 77 57.1
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 5.1e-19 97.4 77 54.5
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.1e-18 96.3 77 54.5
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.5e-18 95.9 77 53.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 4.4e-18 94.4 77 53.2
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.7e-17 92.4 77 53.2
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 2.2e-17 92.0 77 53.2
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 2.8e-17 91.7 77 54.5
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 8.2e-17 90.1 79 50.6
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.1e-16 89.7 77 53.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.4e-16 88.6 77 51.9
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 5.3e-16 87.4 77 49.4
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 7.7e-15 83.6 77 50.6
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 7.7e-15 83.6 77 50.6
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.3e-14 82.8 77 50.6
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.7e-14 82.4 76 44.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 2.9e-14 81.6 77 50.6
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 3.8e-14 81.3 76 44.7
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.8e-14 81.3 77 49.4
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 3.8e-14 81.3 51 80.4
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.8e-14 81.3 77 50.6
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 8.5e-14 80.1 77 48.1
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 8.5e-14 80.1 77 49.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.1e-13 79.7 77 49.4
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.5e-13 79.3 77 40.3
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.9e-13 79.0 77 44.2
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.9e-13 79.0 77 48.1
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.9e-13 79.0 77 50.6
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 2.5e-13 78.6 77 46.8
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.2e-13 78.2 77 48.1
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.2e-13 78.2 77 46.8
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.2e-13 77.8 76 50.0
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 4.2e-13 77.8 77 41.6
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.2e-13 77.0 76 50.0
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 7.2e-13 77.0 77 48.1
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 9.4e-13 76.6 77 45.5
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.4e-13 76.6 78 46.2
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 9.4e-13 76.6 76 46.1
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 9.4e-13 76.6 76 46.1
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 9.4e-13 76.6 75 42.7
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 1.2e-12 76.3 77 46.8
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 1.2e-12 76.3 77 46.8
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.6e-12 75.9 77 48.1
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 1.6e-12 75.9 77 45.5
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.6e-12 75.9 77 45.5
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.6e-12 75.9 77 50.6
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 2.1e-12 75.5 77 49.4
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 2.1e-12 75.5 77 45.5
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 2.7e-12 75.1 77 42.9
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.7e-12 75.1 77 42.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 3.6e-12 74.7 77 44.2
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 3.6e-12 74.7 77 44.2
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 3.6e-12 74.7 77 45.5
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 3.6e-12 74.7 78 44.9
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 4.7e-12 74.3 77 42.9
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 4.7e-12 74.3 77 42.9
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 4.7e-12 74.3 77 42.9
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 4.7e-12 74.3 77 42.9
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.7e-12 74.3 77 42.9
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.1e-12 73.9 77 42.9
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 8.0e-12 73.6 77 41.6
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 8.0e-12 73.6 79 43.0
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 8.0e-12 73.6 57 57.9
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.0e-11 73.2 78 43.6
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.0e-11 73.2 78 43.6
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 1.0e-11 73.2 77 41.6
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.4e-11 72.8 76 46.1
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 1.4e-11 72.8 79 43.0
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.8e-11 72.4 77 42.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.8e-11 72.4 78 43.6
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.3e-11 72.0 77 44.2
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 2.3e-11 72.0 57 54.4
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.0e-11 71.6 77 44.2
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 4.0e-11 71.2 56 55.4
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 8.8e-11 70.1 78 42.3
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 8.8e-11 70.1 57 54.4
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 2.6e-10 68.6 77 42.9
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 3.3e-10 68.2 57 56.1
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 3.3e-10 68.2 75 41.3
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.7e-09 65.9 77 40.3
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 3.7e-09 64.7 77 41.6
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 3.7e-09 64.7 76 40.8
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 6.3e-09 63.9 77 35.1
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.1e-08 63.2 49 55.1
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.8e-08 62.4 56 50.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.2e-07 59.7 77 42.9
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 3.5e-07 58.2 53 45.3
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.5e-07 58.2 72 40.3
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 4.5e-07 57.8 53 43.4
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 5.9e-07 57.4 77 36.4


User provided reference genes

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