Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 0.0e+00 1636.3 891 100.0
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 0.0e+00 1557.3 897 95.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 0.0e+00 1542.7 916 93.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 0.0e+00 1388.6 897 86.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1365.9 896 84.4
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 0.0e+00 1191.8 813 80.9
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1177.2 896 75.0
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.2e-305 1053.1 902 63.5
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 4.9e-304 1047.7 899 65.9
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 2.5e-303 1045.4 911 63.7
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 7.9e-294 1013.8 900 64.7
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.9e-293 1011.5 907 63.1
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.5e-289 998.0 924 62.2
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.0e-288 994.6 607 87.3
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 8.8e-285 983.8 905 61.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.8e-280 968.4 902 61.9
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 9.4e-279 963.8 917 61.2
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.8e-277 959.5 900 62.6
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.4e-276 954.1 920 60.3
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.7e-272 943.0 909 59.4
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.2e-272 942.6 900 61.0
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.9e-272 942.2 901 59.2
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 3.0e-269 932.2 912 59.9
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.4e-266 923.3 914 58.2
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 2.4e-266 922.5 896 61.0
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.2e-265 920.2 863 60.7
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.0e-264 917.1 903 57.3
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.0e-261 907.1 916 58.0
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 8.8e-261 904.0 917 58.6
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 7.5e-260 901.0 903 58.8
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.7e-259 899.8 919 57.9
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.8e-259 899.0 871 59.9
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 5.3e-258 894.8 912 57.7
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.5e-255 886.7 871 58.8
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.3e-253 879.4 912 59.2
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.3e-253 879.4 912 59.2
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.5e-252 876.7 905 56.1
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.4e-250 870.2 912 57.9
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 4.1e-250 868.6 911 56.9
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 5.4e-250 868.2 903 55.8
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 7.7e-249 864.4 900 55.2
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.8e-248 862.1 904 56.1
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.1e-247 860.5 837 58.5
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.5e-247 859.4 860 58.1
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.6e-246 856.7 872 56.8
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 2.8e-246 855.9 909 54.8
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.6e-246 855.5 906 57.0
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.8e-245 853.2 902 55.0
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 2.3e-245 852.8 901 57.2
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.4e-244 849.0 732 64.3
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 7.5e-244 847.8 893 55.2
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.7e-243 846.7 934 55.5
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 2.2e-243 846.3 903 57.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 4.9e-243 845.1 878 57.3
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 2.4e-242 842.8 906 57.0
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.7e-240 836.6 760 62.5
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.7e-240 836.6 869 56.2
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 5.0e-240 835.1 877 55.3
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 8.6e-240 834.3 859 58.1
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.1e-239 833.9 898 55.6
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 2.8e-238 829.3 904 55.2
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 4.7e-238 828.6 906 54.1
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 8.0e-238 827.8 923 57.2
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 6.8e-237 824.7 904 54.5
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 2.0e-236 823.2 916 54.6
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 5.8e-236 821.6 909 53.9
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.9e-235 819.3 921 53.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.9e-235 818.5 907 53.7
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 2.4e-234 816.2 876 57.2
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.6e-233 813.5 821 58.1
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.6e-233 813.5 900 53.8
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.0e-232 810.8 920 53.8
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.6e-232 807.7 900 53.9
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.6e-230 802.4 895 54.9
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 4.7e-230 802.0 925 52.9
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 4.7e-230 802.0 861 56.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.3e-229 799.7 899 55.3
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 6.8e-229 798.1 874 53.8
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.5e-228 797.0 903 53.3
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.6e-228 796.2 863 55.4
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 7.5e-228 794.7 901 55.5
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.9e-227 792.7 867 54.3
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 4.9e-227 792.0 809 58.5
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 7.8e-225 784.6 859 54.1
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.3e-224 783.9 863 54.5
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.7e-224 783.5 860 54.9
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 5.1e-224 781.9 902 54.5
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.1e-218 764.2 858 53.4
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 4.1e-218 762.3 858 53.0
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 2.1e-217 760.0 901 50.8
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.5e-217 759.2 860 52.9
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.0e-216 757.7 923 50.4
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 7.3e-215 751.5 900 50.2
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.2e-214 750.7 900 53.0
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-212 744.2 863 52.0
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.6e-212 743.0 895 49.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.8e-212 741.9 864 50.9
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-211 740.3 857 52.4
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-210 736.1 872 51.3
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 3.2e-210 736.1 884 51.0
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 5.4e-210 735.3 903 51.7
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.4e-205 720.7 871 49.3
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.2e-202 709.5 879 48.5
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 9.6e-199 698.0 857 50.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.6e-198 697.2 886 49.2
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 3.6e-198 696.0 860 49.0
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 8.4e-195 684.9 869 48.4
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.4e-194 684.1 859 48.1
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 4.8e-190 669.1 757 52.7
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 4.2e-186 656.0 831 48.9
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 9.3e-186 654.8 562 65.8
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.0e-180 637.1 886 46.4
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 8.2e-174 615.1 657 56.8
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-173 614.0 863 45.9
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 7.2e-170 602.1 869 46.0
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 6.1e-169 599.0 869 44.9
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.1e-162 578.2 656 55.2
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.2e-154 550.1 1049 39.5
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 9.1e-133 478.8 823 40.2
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 5.0e-131 473.0 405 64.7
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.6e-124 451.4 1036 35.2
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.9e-122 444.5 913 37.8
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 5.6e-122 443.0 765 41.0
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.2e-118 431.0 436 54.4
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.6e-116 423.3 459 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.5e-108 397.1 951 36.7
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 6.8e-104 382.9 1026 34.9
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 5.2e-96 356.7 343 57.7
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.9e-93 348.2 248 72.6
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.2e-93 347.1 278 65.8
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 5.4e-93 346.7 481 46.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 7.1e-93 346.3 879 32.3
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 7.1e-93 346.3 879 32.3
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.5e-90 338.6 345 53.9
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 7.9e-84 316.2 977 30.0
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.0e-71 275.0 240 61.7
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 8.4e-70 269.6 161 87.0
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 4.2e-69 267.3 455 41.3
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.2e-68 265.8 727 33.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.9e-66 258.5 409 43.0
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 4.3e-66 257.3 200 66.5
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-65 255.0 409 42.8
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 3.4e-63 247.7 424 42.5
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 4.5e-63 247.3 328 47.3
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 8.4e-62 243.0 416 42.1
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-59 236.1 368 43.8
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.2e-57 228.4 882 27.0
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 4.8e-57 227.3 407 41.5
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 6.7e-51 206.8 131 80.2
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 9.7e-50 203.0 370 39.2
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 6.9e-48 196.8 311 44.4
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 8.5e-46 189.9 314 41.1
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.1e-43 180.6 177 61.0
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.6e-42 178.3 172 58.7
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.4e-42 177.6 322 41.9
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.1e-40 171.0 247 44.1
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 2.9e-38 164.9 192 51.6
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.8e-38 164.5 701 27.4
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 7.2e-37 160.2 992 25.0
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.3e-35 155.2 227 42.3
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 8.8e-35 153.3 166 54.2
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-34 152.9 315 37.5
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.6e-34 151.8 314 36.9
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 2.6e-34 151.8 191 51.3
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.2e-33 148.7 239 41.4
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-29 134.8 288 36.8
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 5.5e-29 134.0 288 37.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 9.4e-29 133.3 128 58.6
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 6.8e-27 127.1 839 24.4
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.8e-24 119.0 122 63.1
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 3.1e-24 118.2 82 76.8
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.0e-19 103.2 102 59.8
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 9.8e-18 96.7 203 35.0
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.3e-17 96.3 326 32.5
CAN.G1155.3 Capsicum annuum HOM05D000198 ORTHO05D004760 6.3e-17 94.0 115 52.2
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 5.6e-13 80.9 170 37.1
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 9.8e-10 70.1 171 34.5
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 1.0e-06 60.1 109 40.4


User provided reference genes

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