Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 1.1e-202 709.9 394 100.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 2.5e-199 698.7 394 98.5
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 8.0e-198 693.7 394 98.0
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 2.4e-194 682.2 394 95.7
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 4.0e-189 664.8 394 92.9
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.1e-170 603.6 394 87.8
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.4e-170 601.3 394 84.8
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.6e-169 599.7 394 84.8
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.5e-167 592.4 394 82.7
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 5.2e-165 584.7 394 82.2
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 2.9e-163 578.9 394 82.2
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 4.1e-162 575.1 404 82.2
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 5.4e-162 574.7 394 80.7
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 5.4e-162 574.7 394 81.5
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.2e-161 573.5 394 80.5
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 3.5e-161 572.0 394 79.9
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 4.6e-161 571.6 394 79.2
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 1.3e-160 570.1 394 81.0
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.7e-160 569.7 394 78.4
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 79.7
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 77.9
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 1.9e-159 566.2 394 79.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 2.5e-159 565.8 394 79.9
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 3.3e-159 565.5 394 79.7
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 4.3e-159 565.1 394 77.7
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 7.3e-159 564.3 394 79.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.6e-158 563.1 438 74.0
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 75.4
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.1e-158 562.8 410 78.0
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 79.4
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 76.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.8e-158 562.4 394 79.4
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.8e-158 562.4 394 79.4
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 3.6e-158 562.0 394 79.4
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 79.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 79.2
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.4e-157 560.1 394 77.4
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 77.9
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 78.7
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 5.2e-157 558.1 417 77.7
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 6.9e-157 557.8 394 76.6
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 77.4
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 4.4e-156 555.1 392 76.8
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 5.8e-156 554.7 394 77.4
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 9.9e-156 553.9 394 78.2
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.3e-155 553.5 396 77.3
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.9e-155 552.4 394 83.8
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 3.8e-155 552.0 395 78.5
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 4.9e-155 551.6 394 76.9
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 6.4e-155 551.2 395 73.7
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 6.4e-155 551.2 394 76.9
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.1e-154 550.4 395 78.7
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 4.2e-154 548.5 395 73.4
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 4.2e-154 548.5 394 78.9
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 7.1e-154 547.7 395 73.4
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 6.0e-153 544.7 394 72.1
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.3e-152 543.5 397 73.0
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 2.3e-152 542.7 397 76.1
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 78.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.9e-151 539.7 394 72.6
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 4.3e-151 538.5 394 71.3
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 7.3e-151 537.7 394 71.8
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.8e-150 535.0 394 72.1
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.5e-148 530.0 370 79.2
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.6e-148 529.3 394 71.1
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 4.5e-148 528.5 394 75.4
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 5.8e-148 528.1 378 76.5
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 7.6e-148 527.7 370 79.5
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-147 526.9 397 75.8
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.7e-147 526.6 397 75.6
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 4.9e-147 525.0 394 70.6
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.9e-147 525.0 394 67.0
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 8.4e-147 524.2 394 70.6
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 8.4e-147 524.2 394 70.6
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.4e-146 523.5 399 70.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 4.2e-146 521.9 394 75.4
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 9.3e-146 520.8 394 67.8
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 2.7e-145 519.2 394 74.9
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.0e-144 517.3 393 75.1
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.0e-144 517.3 394 74.9
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 3.9e-144 515.4 394 74.4
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 7.4e-143 511.1 394 74.6
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 2.8e-142 509.2 395 73.2
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.4e-141 506.9 395 72.4
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.5e-140 503.4 378 70.1
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 6.4e-139 498.0 426 69.5
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.4e-138 496.1 409 70.2
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 5.5e-138 495.0 394 72.1
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 3.5e-137 492.3 405 71.1
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 6.7e-136 488.0 387 74.2
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 7.4e-135 484.6 401 70.1
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.9e-133 478.0 397 69.0
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 7.1e-130 468.0 358 69.0
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 2.1e-129 466.5 403 63.8
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.3e-128 463.0 394 63.5
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 5.1e-120 435.3 372 68.8
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.3e-118 430.6 394 58.6
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 2.0e-111 406.8 346 71.7
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 3.7e-110 402.5 382 61.0
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 6.5e-99 365.2 287 75.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.5e-98 364.0 394 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.4e-93 347.4 399 48.9
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.0e-91 341.3 394 52.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.0e-91 339.0 246 69.5
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.9e-90 337.0 401 49.9
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 6.8e-88 328.6 327 64.5
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 4.7e-81 305.8 298 56.0
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.3e-75 287.7 378 48.1
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 1.9e-74 283.9 302 54.0
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.0e-68 263.8 181 72.4
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.7e-67 260.8 181 71.8
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 1.7e-67 260.8 390 50.5
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 7.8e-60 235.3 292 50.3
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.3e-51 208.0 540 31.7
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.5e-50 203.8 153 75.8
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.5e-50 203.8 419 32.9
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 8.1e-49 198.7 122 82.0
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 3.2e-45 186.8 204 52.9
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 4.2e-45 186.4 165 58.8
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 7.8e-44 182.2 409 35.0
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 3.3e-42 176.8 125 73.6
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 7.3e-42 175.6 392 33.2
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 5.3e-40 169.5 165 53.3
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 3.3e-34 150.2 92 80.4
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.7e-30 137.9 88 81.8
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-30 137.1 137 52.6
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.1e-29 135.2 125 65.6
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 2.4e-29 134.0 71 83.1
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 8.7e-27 125.6 149 45.6
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 1.6e-25 121.3 71 81.7
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.1e-24 118.6 88 68.2
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.2e-23 115.2 129 49.6
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 2.6e-23 114.0 104 56.7
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 3.4e-23 113.6 130 65.4
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.4e-22 109.4 147 41.5
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 4.8e-17 93.2 80 66.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.1e-16 92.0 50 78.0
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 6.5e-14 82.8 85 48.2
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.2e-13 80.5 46 84.8
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.2e-13 80.5 48 66.7
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 4.6e-12 76.6 51 74.5
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 2.3e-11 74.3 44 84.1
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 6.7e-11 72.8 47 70.2
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.3e-10 70.1 38 89.5
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 3.1e-08 63.9 35 85.7


User provided reference genes

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