Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 2.8e-171 606.7 620 100.0
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 2.0e-137 494.2 620 91.1
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 2.7e-134 483.8 620 91.1
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.7e-99 367.1 624 76.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.2e-94 349.7 250 71.6
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.3e-83 315.5 184 82.1
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 9.9e-68 262.7 207 64.7
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 5.1e-48 197.2 270 45.2
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 4.0e-45 187.6 116 76.7
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 4.0e-45 187.6 260 40.0
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.5e-42 178.3 132 67.4
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.1e-41 175.3 188 45.7
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 4.6e-41 174.1 173 48.6
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 8.7e-40 169.9 244 40.6
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 5.3e-37 160.6 190 41.1
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 6.9e-37 160.2 192 41.1
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 6.9e-37 160.2 190 43.2
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 9.0e-37 159.8 248 39.9
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 4.5e-36 157.5 182 44.0
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 2.7e-33 148.3 226 35.8
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.0e-32 146.4 230 38.3
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 1.3e-32 146.0 169 46.7
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.1e-29 136.3 209 38.3
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.8e-29 135.6 140 47.1
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 3.1e-29 134.8 139 44.6
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 5.3e-29 134.0 248 31.9
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 6.9e-29 133.7 203 39.9
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 2.0e-28 132.1 203 36.5
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 2.0e-28 132.1 151 41.7
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 4.5e-28 131.0 140 44.3
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 7.7e-28 130.2 165 40.6
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.0e-27 129.8 246 31.3
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.2e-27 128.6 221 36.2
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 6.5e-27 127.1 215 34.0
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 8.5e-27 126.7 188 36.7
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.4e-26 125.9 183 38.8
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 5.5e-26 124.0 133 39.8
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.2e-25 122.9 201 35.8
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.6e-25 122.5 170 37.6
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 2.1e-25 122.1 225 30.2
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 7.9e-25 120.2 129 41.9
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.0e-24 119.8 183 37.7
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.4e-24 119.4 199 35.2
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.4e-24 119.4 139 42.4
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.4e-24 119.4 163 36.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 6.7e-24 117.1 132 41.7
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 6.7e-24 117.1 146 39.7
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.1e-23 116.3 174 38.5
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 1.5e-23 115.9 261 29.9
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.5e-23 115.9 182 34.6
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.5e-23 115.9 182 34.6
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 2.5e-23 115.2 123 43.9
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 7.4e-23 113.6 173 37.6
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 7.4e-23 113.6 185 35.7
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 9.7e-23 113.2 134 44.0
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 3.7e-22 111.3 166 36.7
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 3.7e-22 111.3 171 35.7
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.4e-21 109.4 150 38.0
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.4e-21 108.6 211 31.8
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.4e-21 108.6 143 39.2
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 3.1e-21 108.2 258 30.2
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 5.3e-21 107.5 159 37.1
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.9e-21 107.1 240 30.8
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 9.1e-21 106.7 132 37.1
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.0e-20 105.5 125 38.4
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.4e-20 104.8 192 33.3
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 7.7e-20 103.6 114 42.1
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 1.3e-19 102.8 130 36.2
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 1.7e-19 102.4 186 33.3
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 2.2e-19 102.1 181 33.1
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 2.9e-19 101.7 186 33.3
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.9e-19 101.7 186 33.3
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.5e-19 100.5 162 35.2
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 6.5e-19 100.5 127 39.4
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 8.5e-19 100.1 130 36.2
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.1e-18 99.8 172 30.8
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 1.4e-18 99.4 182 35.7
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.9e-18 99.0 132 37.9
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 4.2e-18 97.8 145 36.6
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 5.5e-18 97.4 133 35.3
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.7e-17 95.1 147 34.7
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.6e-17 94.7 214 28.5
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.4e-16 92.8 149 36.2
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 3.9e-16 91.3 144 34.7
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 3.9e-16 91.3 144 34.7
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 5.1e-16 90.9 182 31.9
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 1.1e-15 89.7 263 27.8
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.7e-15 87.4 134 31.3
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 7.4e-15 87.0 178 27.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 7.4e-15 87.0 150 36.0
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 7.4e-15 87.0 139 35.3
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 9.7e-15 86.7 153 31.4
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 9.7e-15 86.7 130 35.4
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 1.3e-14 86.3 129 37.2
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 1.7e-14 85.9 169 31.4
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 1.7e-14 85.9 147 34.0
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 1.4e-13 82.8 147 33.3
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 2.4e-13 82.0 137 32.1
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 3.1e-13 81.6 138 34.8
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 9.1e-13 80.1 250 24.8
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 3.5e-12 78.2 133 30.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.7e-11 75.9 251 25.9
CAN.G1030.27 Capsicum annuum HOM05D006287 ORTHO05D008192 5.5e-10 70.9 39 79.5
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 9.4e-10 70.1 111 34.2
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 1.0e-08 66.6 61 50.8
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 3.0e-08 65.1 159 31.4
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 4.0e-08 64.7 107 36.4
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 3.7e-06 58.2 132 25.0
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 6.3e-06 57.4 172 27.9


User provided reference genes

Program Settings