Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 1.7e-105 386.0 188 100.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.9e-105 385.2 188 99.5
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 6.5e-105 384.0 188 98.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 6.5e-105 384.0 188 98.9
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 7.9e-103 377.1 188 95.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 95.2
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 6.7e-102 374.0 188 95.2
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 9.7e-101 370.2 188 95.2
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.3e-93 345.1 188 87.8
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 86.7
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 86.2
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 85.1
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 85.6
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 85.6
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 85.6
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.0
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 83.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 83.5
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 83.5
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.4
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 5.5e-88 327.8 180 86.1
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 82.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 83.0
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 82.4
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 83.0
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 82.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 82.4
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.3
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 83.0
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 83.0
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 79.8
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.9
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 81.4
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 81.9
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 79.8
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.4
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 81.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 82.4
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 3.9e-86 321.6 189 83.6
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 82.4
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 5.2e-86 321.2 189 84.1
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 81.9
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 81.9
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 8.8e-86 320.5 189 83.1
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 81.4
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 79.3
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 82.4
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 81.4
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 81.4
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 2.6e-85 318.9 189 82.0
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 79.8
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 82.4
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 80.9
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 78.7
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 9.7e-85 317.0 189 82.0
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 80.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 80.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 80.9
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 83.0
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 80.3
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.3e-84 316.6 185 80.0
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.3e-84 316.6 185 80.5
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 80.9
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 80.3
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 81.4
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 81.4
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 81.4
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 80.3
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 80.3
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 80.9
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 80.9
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 80.9
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 80.3
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.8e-84 315.5 187 80.2
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 80.3
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 80.3
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 81.4
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 81.4
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 81.4
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 81.4
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 4.8e-84 314.7 185 79.5
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 80.9
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 79.3
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 79.3
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 79.3
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 8.2e-84 313.9 185 80.0
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 8.2e-84 313.9 185 80.0
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 78.7
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 80.3
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 79.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 78.2
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 80.9
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 76.6
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 4.1e-83 311.6 189 82.0
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.3e-83 311.2 190 80.5
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.3e-83 311.2 190 80.5
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 78.7
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 185 79.5
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 76.6
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 78.7
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 77.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 76.6
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 4.5e-82 308.1 179 81.6
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 77.1
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 78.7
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 77.7
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.2e-80 301.6 180 76.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 74.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 3.0e-78 295.4 188 75.5
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.5e-77 293.1 188 74.5
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.0e-77 292.7 188 76.1
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 4.4e-77 291.6 188 73.4
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.8e-76 288.9 188 76.6
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 3.7e-76 288.5 188 75.0
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 8.2e-76 287.3 190 74.2
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.1e-75 287.0 190 73.7
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.1e-75 287.0 188 72.3
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.1e-75 285.0 174 78.2
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.6e-74 283.1 188 71.3
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.6e-74 283.1 188 71.3
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 2.7e-74 282.3 188 69.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.5e-74 282.0 169 78.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 4.5e-74 281.6 188 68.6
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 72.3
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 6.1e-71 271.2 189 69.3
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.8e-70 269.6 188 69.7
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 5.2e-70 268.1 179 73.7
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.2e-69 266.9 179 72.6
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.8e-67 259.6 188 70.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 4.1e-67 258.5 177 72.3
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 4.5e-66 255.0 187 64.7
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.3e-65 253.4 187 65.8
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.3e-65 252.7 188 69.1
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 9.5e-64 247.3 187 62.6
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 2.6e-61 239.2 181 66.3
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 2.8e-60 235.7 178 62.9
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 8.3e-60 234.2 188 56.9
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.0e-57 227.3 188 62.2
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 3.6e-55 218.8 165 69.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.5e-48 196.8 187 50.3
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 6.2e-47 191.4 115 79.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.9e-43 179.9 119 71.4
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 3.0e-41 172.6 127 65.4
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.5e-40 169.5 109 75.2
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.5e-40 167.5 173 54.3
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 2.8e-39 166.0 123 69.1
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.1e-38 162.5 188 50.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.2e-37 160.6 85 89.4
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 3.8e-28 129.0 78 75.6
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.2e-23 114.0 64 81.2
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 4.7e-23 112.1 91 63.7
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 2.7e-10 69.7 35 88.6
Cfa022336 Carpinus fangiana HOM05D004362 ORTHO05D122733 1.3e-07 60.8 75 44.0
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.6e-07 60.5 39 71.8
Peaxi162Scf00096g00093 Petunia axillaris HOM05D004362 ORTHO05D306384 1.4e-06 57.4 65 52.3


User provided reference genes

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