Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.4e-59 233.0 146 100.0
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 1.5e-56 223.0 146 96.6
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 7.4e-56 220.7 146 95.2
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 5.6e-48 194.5 146 87.7
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 6.2e-47 191.0 146 84.2
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.8e-46 189.5 145 85.5
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.6e-45 185.7 146 82.9
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.6e-45 185.7 143 83.9
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.1e-42 176.0 146 78.1
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.5e-42 175.3 146 78.1
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 8.2e-39 164.1 143 54.5
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.2e-37 160.2 145 75.2
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 2.2e-36 156.0 140 76.4
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 8.5e-36 154.1 142 69.0
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 4.2e-35 151.8 129 76.0
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 9.4e-35 150.6 138 69.6
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 9.4e-35 150.6 148 70.9
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.6e-34 149.8 137 73.7
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.7e-34 149.1 138 68.8
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 3.6e-34 148.7 129 75.2
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.6e-34 148.3 148 68.2
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.0e-33 147.1 137 72.3
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.0e-33 147.1 133 72.2
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 2.3e-33 146.0 129 73.6
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 2.3e-33 146.0 129 73.6
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 3.0e-33 145.6 128 71.9
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.0e-33 145.6 148 68.2
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 3.9e-33 145.2 129 64.3
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 5.1e-33 144.8 140 71.4
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 5.1e-33 144.8 129 76.0
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 1.9e-32 142.9 136 71.3
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.9e-32 142.9 132 69.7
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 3.3e-32 142.1 133 71.4
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.3e-32 142.1 144 61.1
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.3e-32 142.1 141 68.1
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 4.3e-32 141.7 142 69.7
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.7e-32 141.4 139 68.3
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 5.7e-32 141.4 136 69.9
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 1.3e-31 140.2 137 72.3
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 1.7e-31 139.8 129 70.5
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 2.2e-31 139.4 136 69.9
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.2e-31 139.4 139 67.6
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.2e-31 139.4 129 71.3
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 3.7e-31 138.7 88 69.3
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 4.8e-31 138.3 140 67.9
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 4.8e-31 138.3 138 68.8
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 4.8e-31 138.3 136 70.6
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 5.3e-30 134.8 129 68.2
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 5.3e-30 134.8 136 69.1
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 6.9e-30 134.4 135 65.9
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 9.1e-30 134.0 129 67.4
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 1.5e-29 133.3 134 59.0
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.6e-29 132.5 141 66.0
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.4e-29 132.1 136 67.6
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 4.5e-29 131.7 129 67.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 4.5e-29 131.7 129 65.9
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 4.5e-29 131.7 131 67.9
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 4.5e-29 131.7 140 54.3
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 1.0e-28 130.6 129 52.7
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.3e-28 130.2 140 67.1
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.2e-28 129.4 139 66.2
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.9e-28 129.0 144 64.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.0e-28 128.3 119 75.6
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 1.9e-27 126.3 123 71.5
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 2.5e-27 125.9 119 72.3
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 5.5e-27 124.8 132 68.2
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 7.2e-27 124.4 125 48.0
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 9.4e-27 124.0 139 61.9
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 9.4e-27 124.0 119 74.8
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 9.4e-27 124.0 133 63.2
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.6e-26 123.2 129 66.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 2.7e-26 122.5 131 63.4
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 2.7e-26 122.5 83 63.9
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 4.7e-26 121.7 129 65.1
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.0e-25 120.6 129 62.8
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 1.8e-25 119.8 127 70.1
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.8e-25 119.8 126 64.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.8e-25 119.8 126 64.3
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.8e-25 119.8 137 60.6
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 2.3e-25 119.4 131 62.6
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 3.9e-25 118.6 120 71.7
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 5.1e-25 118.2 126 64.3
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 5.1e-25 118.2 126 64.3
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.6e-24 115.9 139 58.3
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 2.6e-24 115.9 129 61.2
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 3.3e-24 115.5 126 61.9
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 5.7e-24 114.8 140 57.9
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 7.4e-24 114.4 80 57.5
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 2.2e-23 112.8 80 56.2
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.4e-22 109.4 112 72.3
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 3.1e-22 109.0 137 52.6
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 7.0e-22 107.8 135 41.5
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 9.1e-22 107.5 129 58.1
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 9.1e-22 107.5 138 55.1
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 9.1e-22 107.5 138 55.1
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.5e-21 106.7 138 54.3
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.5e-21 106.7 131 56.5
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.5e-21 105.1 116 47.4
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 5.9e-21 104.8 82 50.0
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.0e-20 104.0 143 53.8
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.0e-20 104.0 101 78.2
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 3.8e-20 102.1 138 54.3
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 6.5e-20 101.3 142 38.7
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 8.5e-20 100.9 136 60.3
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 8.5e-20 100.9 131 55.0
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 3.2e-19 99.0 135 53.3
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.6e-18 96.7 135 54.1
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.6e-18 96.7 135 54.1
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 8.0e-18 94.4 125 56.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.8e-17 93.2 131 52.7
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.5e-16 90.1 132 53.0
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 2.0e-16 89.7 120 52.5
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 9.7e-16 87.4 133 42.1
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 9.7e-16 87.4 95 64.2
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 3.8e-12 75.5 127 48.0
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 5.0e-12 75.1 119 33.6
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 5.0e-12 75.1 119 33.6
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 5.0e-12 75.1 119 33.6
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 6.5e-12 74.7 122 32.0
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 6.5e-12 74.7 120 33.3
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 6.5e-12 74.7 120 33.3
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 1.5e-11 73.6 136 46.3
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.5e-11 73.6 63 49.2
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 2.5e-11 72.8 147 31.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 3.6e-10 68.9 118 32.2
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.3e-08 62.4 93 51.6
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 7.5e-08 61.2 80 31.2
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 7.5e-08 61.2 58 44.8
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 1.3e-07 60.5 96 31.2


User provided reference genes

Program Settings