Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 8.2e-96 353.6 165 100.0
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 5.9e-94 347.4 165 97.6
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.7e-93 345.9 165 97.0
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 3.7e-88 328.2 165 91.5
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 4.1e-87 324.7 164 91.5
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.7e-86 322.0 181 85.1
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.0e-81 305.8 164 82.3
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 4.4e-81 304.7 160 86.2
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 9.1e-79 297.0 160 84.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.5e-78 294.7 164 79.9
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.9e-78 294.3 164 80.5
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.0e-77 293.5 163 79.1
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.3e-77 293.1 160 81.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.2e-77 292.4 164 80.5
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.5e-77 290.8 160 80.6
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.5e-77 290.8 160 80.0
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 6.5e-77 290.8 164 80.5
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 8.5e-77 290.4 164 79.9
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.1e-76 290.0 160 80.6
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.5e-76 289.7 159 82.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.9e-76 289.3 164 79.9
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 3.2e-76 288.5 158 79.7
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.2e-76 288.5 163 79.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 7.2e-76 287.3 164 78.7
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.1e-75 285.8 160 81.2
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 4.7e-75 284.6 160 78.8
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.7e-75 284.6 164 75.6
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 8.0e-75 283.9 159 80.5
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 3.0e-74 282.0 159 77.4
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.0e-74 282.0 137 95.6
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 3.0e-74 282.0 160 78.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 5.2e-74 281.2 164 76.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 8.8e-74 280.4 160 77.5
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 8.8e-74 280.4 160 76.9
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.2e-73 280.0 160 78.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.2e-73 280.0 163 76.1
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.6e-73 278.9 160 77.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 4.4e-73 278.1 160 76.9
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 5.7e-73 277.7 163 75.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 7.5e-73 277.3 160 76.2
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 9.8e-73 276.9 160 75.6
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.3e-72 276.6 163 75.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.7e-72 276.2 163 74.8
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 2.2e-72 275.8 160 75.0
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.8e-72 275.4 162 75.3
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 4.9e-72 274.6 160 75.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.4e-71 273.1 165 77.6
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.8e-71 272.7 159 74.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 1.8e-71 272.7 160 75.6
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.4e-71 272.3 160 74.4
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 4.1e-71 271.6 160 77.5
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 5.4e-71 271.2 160 75.6
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.2e-70 270.0 158 75.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.0e-70 269.2 155 76.8
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.0e-70 269.2 160 76.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.7e-70 268.9 160 75.0
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 3.5e-70 268.5 160 75.0
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 4.5e-70 268.1 164 71.3
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 5.9e-70 267.7 159 76.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 5.9e-70 267.7 159 76.7
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 2.3e-69 265.8 159 74.2
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.9e-69 265.4 159 74.2
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.1e-68 263.5 159 73.0
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.9e-68 262.7 162 71.0
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.9e-68 262.7 159 74.2
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 4.3e-68 261.5 159 74.2
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.6e-67 259.6 160 72.5
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.8e-67 258.8 160 74.4
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.8e-67 258.8 160 74.4
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.8e-67 258.8 160 74.4
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.7e-67 258.1 160 75.0
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 4.7e-67 258.1 159 71.7
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.1e-67 257.7 159 73.0
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 8.9e-66 253.8 160 71.2
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.2e-65 253.4 160 71.9
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.2e-65 253.4 160 71.9
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.5e-65 253.1 160 71.2
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.6e-65 252.3 160 70.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 5.7e-65 251.1 164 67.1
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 9.8e-65 250.4 160 70.6
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.7e-64 249.6 160 70.0
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.7e-64 249.6 139 80.6
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 2.2e-64 249.2 160 70.0
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 2.9e-64 248.8 140 81.4
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.9e-64 248.8 160 71.2
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 4.9e-64 248.1 160 69.4
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 4.9e-64 248.1 161 72.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 6.4e-64 247.7 160 68.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.1e-63 246.9 161 68.3
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.1e-63 246.9 165 69.1
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.1e-63 246.9 165 69.1
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.8e-63 246.1 158 67.1
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 5.9e-62 241.1 141 75.9
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.6e-59 231.9 161 67.1
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.3e-58 229.2 157 69.4
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.0e-58 228.4 155 71.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 3.6e-51 205.3 145 69.7
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 3.6e-51 205.3 145 69.7
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.8e-50 203.0 200 50.5
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.8e-49 197.2 160 56.2
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-48 196.1 158 57.0
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-48 195.7 160 56.2
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-48 195.7 160 56.2
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-47 191.0 159 55.3
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 9.2e-47 190.7 212 46.7
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.2e-47 190.7 160 55.0
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-46 189.5 160 55.6
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.0e-46 188.0 160 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 5.1e-45 184.9 180 51.1
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 7.3e-44 181.0 214 43.9
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 6.2e-43 177.9 205 43.4
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 3.1e-42 175.6 163 51.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.4e-40 167.9 160 50.0
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.1e-36 157.1 167 45.5
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.5e-28 130.2 78 80.8
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 9.6e-28 127.5 158 38.6
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 2.8e-27 125.9 89 62.9
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.4e-26 123.6 167 39.5
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 9.0e-26 120.9 84 69.0
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.5e-20 103.6 63 74.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.3e-18 95.1 83 51.8
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 5.8e-17 91.7 56 73.2
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.4e-15 87.0 60 68.3
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 3.9e-13 79.0 63 55.6
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 2.1e-11 73.2 75 45.3
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 4.9e-08 62.0 38 65.8


User provided reference genes

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