Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 0.0e+00 1107.0 546 100.0
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 1.4e-248 862.8 518 84.2
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 2.7e-220 768.8 474 82.7
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 8.8e-179 630.9 477 70.2
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 8.3e-169 597.8 501 65.9
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 4.1e-160 568.9 486 65.2
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 1.0e-158 564.3 491 63.7
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 3.1e-83 313.5 501 42.3
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 5.5e-80 302.8 497 41.6
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.0e-78 297.0 510 40.4
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.5e-72 278.1 496 39.9
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 4.4e-69 266.5 465 40.2
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 9.7e-69 265.4 492 38.4
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 2.0e-66 257.7 411 41.1
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 7.7e-66 255.8 425 38.8
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 7.7e-66 255.8 465 39.1
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.1e-64 251.9 413 41.4
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.5e-64 250.8 482 37.1
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 4.7e-63 246.5 500 36.2
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 8.0e-63 245.7 439 37.1
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 1.2e-61 241.9 439 38.3
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 1.2e-61 241.9 439 38.3
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 2.6e-61 240.7 457 36.3
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.3e-60 238.4 483 36.9
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.3e-57 228.4 527 33.8
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 8.6e-57 225.7 454 37.9
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.9e-56 224.6 470 33.6
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 5.5e-56 223.0 400 37.2
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.2e-55 221.9 438 36.3
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 8.0e-55 219.2 409 37.2
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.4e-54 218.4 496 35.1
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.3e-54 217.6 455 33.6
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.0e-54 217.2 473 33.8
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 5.2e-54 216.5 429 38.0
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.7e-52 211.5 470 34.3
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 1.7e-52 211.5 308 41.6
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 8.3e-52 209.1 562 31.9
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 8.3e-52 209.1 436 35.3
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 2.4e-51 207.6 405 37.0
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 4.1e-51 206.8 488 34.0
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 5.4e-51 206.5 481 33.7
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.9e-49 200.7 508 33.1
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.8e-49 200.3 473 32.8
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 3.8e-49 200.3 474 33.1
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 3.8e-49 200.3 441 34.7
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.1e-48 198.7 429 36.4
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 3.3e-48 197.2 503 33.2
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.6e-48 196.4 473 32.8
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 1.2e-47 195.3 415 35.9
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.6e-47 194.9 498 32.3
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.6e-47 194.9 470 33.2
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 1.6e-47 194.9 305 39.0
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.8e-47 194.1 465 33.8
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 2.8e-47 194.1 437 35.2
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 8.0e-47 192.6 441 34.0
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 8.0e-47 192.6 484 32.6
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 1.0e-46 192.2 493 31.8
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 3.0e-46 190.7 429 32.9
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 5.2e-46 189.9 467 30.2
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 8.9e-46 189.1 482 31.1
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 1.2e-45 188.7 472 31.4
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 1.2e-45 188.7 492 30.5
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.3e-44 185.3 498 30.9
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 4.9e-44 183.3 310 38.4
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 2.4e-43 181.0 466 32.2
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.4e-43 181.0 442 32.6
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.4e-43 181.0 434 32.0
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 3.2e-43 180.6 492 30.5
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 5.4e-43 179.9 328 36.3
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.4e-43 179.9 458 31.4
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 7.0e-43 179.5 417 33.3
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 9.2e-43 179.1 533 32.3
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.7e-42 177.6 496 31.0
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.6e-42 176.8 437 32.5
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 4.6e-42 176.8 488 31.8
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.3e-41 175.3 426 31.9
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 2.3e-41 174.5 429 32.2
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 3.9e-41 173.7 338 34.6
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 5.0e-41 173.3 491 31.4
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 6.6e-41 172.9 487 29.8
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 8.6e-41 172.6 339 36.6
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 1.9e-40 171.4 495 29.7
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 8.0e-39 166.0 431 32.0
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.1e-38 165.6 437 30.7
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 5.8e-37 159.8 280 36.1
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 4.9e-36 156.8 481 30.1
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 8.3e-36 156.0 283 38.2
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 7.0e-35 152.9 470 30.2
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 2.1e-34 151.4 441 30.4
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.0e-34 149.8 464 30.2
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 7.8e-34 149.4 312 35.3
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.1e-32 145.6 407 31.9
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.3e-32 143.7 499 30.3
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.6e-31 141.7 290 33.4
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.6e-31 141.7 306 34.6
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 1.8e-30 138.3 289 34.6
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.0e-30 137.1 337 31.5
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 4.0e-30 137.1 427 29.3
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 9.9e-29 132.5 335 30.4
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 2.2e-28 131.3 291 30.9
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.9e-27 128.3 326 32.8
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.4e-27 127.9 443 28.7
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.7e-26 124.4 417 28.5
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.5e-26 124.0 302 29.1
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.0e-25 122.5 324 29.0
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 2.3e-25 121.3 267 33.7
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 3.9e-25 120.6 306 28.8
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 5.1e-25 120.2 321 29.0
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 8.6e-25 119.4 249 31.7
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.1e-24 119.0 353 29.7
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 7.3e-24 116.3 307 32.6
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.1e-23 114.8 286 29.0
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 3.6e-23 114.0 426 27.2
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 1.4e-22 112.1 429 27.0
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.0e-22 110.5 243 35.0
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.2e-21 109.0 204 31.4
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 9.9e-21 105.9 204 31.4
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 1.2e-18 99.0 152 37.5
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 1.0e-17 95.9 157 35.7
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.0e-17 95.9 157 35.7
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.9e-17 94.0 153 35.3
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 3.3e-16 90.9 201 29.9
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 3.3e-16 90.9 201 29.9
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 3.3e-16 90.9 201 29.9
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 5.6e-16 90.1 159 34.6
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 7.3e-16 89.7 157 35.0
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 2.4e-14 84.7 210 29.0
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 2.4e-14 84.7 210 29.0
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 3.1e-14 84.3 201 30.8
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 5.3e-14 83.6 201 27.9
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 1.2e-13 82.4 311 26.4
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.0e-13 81.6 201 27.9
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.0e-13 81.6 201 29.9
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 3.4e-13 80.9 201 27.9
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 3.4e-13 80.9 201 27.9
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 3.4e-13 80.9 227 32.2
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 4.4e-13 80.5 211 27.5
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.4e-13 80.5 219 28.8
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.7e-12 78.6 204 30.4
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 2.9e-12 77.8 125 36.8
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 4.9e-12 77.0 209 29.2
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 8.4e-12 76.3 202 28.7
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 2.4e-11 74.7 219 26.0
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 3.5e-10 70.9 242 26.4
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.1e-08 65.9 178 30.9
A07p28070 Brassica napus HOM05D004258 ORTHO05D005163 3.3e-08 64.3 139 32.4
BraA07t30452Z Brassica rapa HOM05D004258 ORTHO05D005163 3.3e-08 64.3 139 32.4
CANSAT25G3602 Cannabis sativa HOM05D004258 ORTHO05D005163 7.3e-08 63.2 112 33.9
CARHR070720 Cardamine hirsuta HOM05D004258 ORTHO05D005163 9.6e-08 62.8 185 27.0
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 1.6e-07 62.0 40 67.5
Thhalv10018403m.g Eutrema salsugineum HOM05D004258 ORTHO05D005163 1.6e-07 62.0 177 27.7
BraA07t31801Z Brassica rapa HOM05D004258 ORTHO05D005163 2.1e-07 61.6 59 42.4
Aa31LG4G7240 Aethionema arabicum HOM05D004258 ORTHO05D005163 4.8e-07 60.5 167 28.7
A07p42810 Brassica napus HOM05D004258 ORTHO05D005163 6.2e-07 60.1 90 34.4
C06p51420 Brassica napus HOM05D004258 ORTHO05D005163 6.2e-07 60.1 90 34.4
BolC6t40160H Brassica oleracea HOM05D004258 ORTHO05D005163 6.2e-07 60.1 89 34.8
BcaNung04998 Brassica carinata HOM05D004258 ORTHO05D005163 1.1e-06 59.3 59 42.4
PSO675G4589 Papaver somniferum HOM05D007740 ORTHO05D009757 1.1e-06 59.3 51 43.1
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 1.4e-06 58.9 33 69.7
TWI39G0734 Tripterygium wilfordii HOM05D002415 ORTHO05D002522 1.4e-06 58.9 64 40.6
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 1.8e-06 58.5 50 50.0
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.8e-06 58.5 50 50.0
Os01g0883400 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 1.8e-06 58.5 78 32.1
Medtr1g007670 Medicago truncatula HOM05D002415 ORTHO05D002522 5.3e-06 57.0 47 42.6
CsaV3_5G000290 Cucumis sativus L. HOM05D002415 ORTHO05D002522 6.9e-06 56.6 62 38.7
Nitab4.5_0005326g0040 Nicotiana tabacum HOM05D002415 ORTHO05D002522 6.9e-06 56.6 54 37.0
Lj7A352T22 Lonicera japonica HOM05D004258 ORTHO05D005163 9.0e-06 56.2 100 27.0
Lalb_Chr03g0038281 Lupinus albus HOM05D002415 ORTHO05D002522 9.0e-06 56.2 75 34.7


User provided reference genes

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