Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.1e-104 383.3 183 100.0
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 7.2e-93 344.0 183 90.7
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.6e-92 342.8 183 87.4
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 2.7e-92 342.0 183 90.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.8e-83 312.8 179 82.1
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 5.7e-82 307.8 185 78.4
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 5.6e-77 291.2 179 70.9
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.1e-76 289.3 183 70.5
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.7e-76 288.1 177 74.0
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.7e-76 288.1 177 74.0
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.0e-75 287.0 177 71.2
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 3.4e-74 282.0 181 70.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.7e-73 279.6 185 69.2
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 2.2e-73 279.3 183 70.5
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 6.4e-73 277.7 183 69.4
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 1.1e-72 276.9 183 65.6
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 3.2e-72 275.4 181 68.0
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.7e-71 272.3 181 66.9
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 3.5e-71 271.9 178 66.9
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 4.6e-71 271.6 183 68.3
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.6e-71 271.6 153 83.0
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 2.3e-70 269.2 172 70.3
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 3.0e-70 268.9 183 63.9
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 3.0e-70 268.9 181 66.9
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 3.9e-70 268.5 181 67.4
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 6.6e-70 267.7 176 69.9
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 8.6e-70 267.3 183 66.7
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.9e-69 266.2 185 64.9
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.9e-69 266.2 181 67.4
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.9e-69 266.2 176 69.3
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.3e-69 265.4 181 66.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 4.3e-69 265.0 185 63.8
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 5.6e-69 264.6 183 66.7
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 5.6e-69 264.6 182 66.5
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 5.6e-69 264.6 179 67.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.2e-68 263.5 184 65.2
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 1.2e-68 263.5 181 65.7
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 2.8e-68 262.3 175 66.3
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 4.7e-68 261.5 181 64.6
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 8.0e-68 260.8 184 65.2
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 8.0e-68 260.8 179 65.4
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 8.0e-68 260.8 181 64.1
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.1e-67 260.4 184 64.1
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.3e-67 259.2 184 65.2
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 3.1e-67 258.8 176 64.2
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 3.1e-67 258.8 183 63.9
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.1e-67 258.8 179 64.2
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 5.2e-67 258.1 173 67.1
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 6.8e-67 257.7 185 63.8
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 6.8e-67 257.7 180 62.2
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 6.8e-67 257.7 185 63.2
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 8.9e-67 257.3 180 66.1
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.2e-66 256.9 180 60.6
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.2e-66 256.9 174 66.1
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.2e-66 256.9 182 66.5
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 2.0e-66 256.1 183 61.7
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.6e-66 255.8 177 66.7
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 3.4e-66 255.4 184 60.9
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 4.4e-66 255.0 183 61.2
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 4.4e-66 255.0 176 67.0
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 5.8e-66 254.6 180 63.9
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 7.5e-66 254.2 180 65.0
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.3e-65 253.4 176 62.5
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.7e-65 253.1 184 63.0
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.7e-65 253.1 175 65.7
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 2.2e-65 252.7 185 63.8
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.1e-64 250.4 180 64.4
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.9e-64 249.6 178 64.6
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 2.4e-64 249.2 180 64.4
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 4.1e-64 248.4 175 66.9
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 4.1e-64 248.4 175 65.1
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 4.1e-64 248.4 180 64.4
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 4.1e-64 248.4 178 63.5
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 4.1e-64 248.4 181 62.4
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 9.2e-64 247.3 173 65.9
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 9.2e-64 247.3 177 65.5
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 9.2e-64 247.3 177 65.0
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 4.6e-63 245.0 178 64.0
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.0e-62 243.8 166 66.9
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.0e-62 243.8 180 62.8
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.0e-62 242.3 175 64.0
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 6.6e-62 241.1 156 68.6
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 2.5e-61 239.2 176 60.2
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 5.6e-61 238.0 176 60.2
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 5.6e-61 238.0 154 68.2
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.6e-60 236.5 173 61.3
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.6e-60 236.5 173 61.3
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 3.6e-60 235.3 175 62.3
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.4e-59 233.4 175 61.7
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.4e-59 233.4 151 68.2
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.3e-59 232.6 178 58.4
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 1.5e-58 229.9 175 60.6
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 9.9e-58 227.3 172 61.0
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.9e-57 225.7 154 65.6
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 3.7e-57 225.3 163 62.6
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 3.7e-57 225.3 179 58.1
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 3.7e-57 225.3 175 58.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 8.3e-57 224.2 172 55.8
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 4.1e-56 221.9 166 62.0
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 5.1e-54 214.9 149 65.1
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.1e-53 213.8 173 59.0
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 7.3e-53 211.1 171 57.3
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.6e-50 202.6 172 56.4
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 2.4e-48 196.1 157 57.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 5.4e-48 194.9 175 50.3
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.7e-46 189.9 182 48.9
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.0e-46 189.1 186 46.2
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 8.7e-46 187.6 175 47.4
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.2e-44 183.7 129 61.2
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.1e-40 170.6 140 59.3
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 8.7e-38 161.0 123 57.7
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 5.4e-32 141.7 178 40.4
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.3e-29 132.5 136 50.7
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 8.7e-22 107.8 175 34.3
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 3.1e-19 99.4 75 61.3
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 7.6e-18 94.7 153 37.3
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.6e-15 87.0 184 33.7
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 7.9e-15 84.7 60 55.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 8.7e-14 81.3 97 43.3
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 6.1e-07 58.5 183 26.2
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 7.9e-07 58.2 182 27.5
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.4e-06 57.4 174 27.6
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.4e-06 57.4 185 27.0
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.8e-06 57.0 189 26.5
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.8e-06 57.0 175 28.0
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 3.9e-06 55.8 183 26.2
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 3.9e-06 55.8 180 26.7
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 3.9e-06 55.8 184 26.6
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 5.1e-06 55.5 178 28.1
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 5.1e-06 55.5 183 26.2
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 5.1e-06 55.5 183 26.8
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 5.1e-06 55.5 183 26.8
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 5.1e-06 55.5 183 26.8
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.1e-06 55.5 187 26.7
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 6.7e-06 55.1 177 26.6
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 8.8e-06 54.7 186 26.9
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 8.8e-06 54.7 180 26.7
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 8.8e-06 54.7 180 26.7


User provided reference genes

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