Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1575.1 994 100.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1498.0 1011 84.0
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1493.8 1011 83.2
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1437.2 1017 75.6
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1429.8 1017 75.2
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1425.2 1026 75.6
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1372.8 966 75.7
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1326.2 1017 69.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1300.4 1020 68.2
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1300.4 1020 69.7
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1269.6 1005 69.8
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1222.6 957 69.4
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1199.5 1010 64.8
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 1016 62.8
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 1010 63.5
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1182.5 1010 63.1
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1182.2 1014 63.4
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1169.5 1014 63.4
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1167.5 1009 62.9
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 1006 61.8
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 1022 66.0
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 1004 61.4
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 1003 63.2
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1145.2 1008 62.1
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1143.6 1030 60.5
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1136.3 1009 67.9
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 1002 61.6
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1133.2 1029 60.8
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1132.5 1005 61.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1131.3 1006 61.7
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1130.9 1000 62.0
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1129.8 969 63.1
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1128.6 1010 61.3
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1127.9 1002 61.7
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 993 63.4
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1125.9 1003 60.2
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 1004 61.2
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 1002 61.6
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 1016 60.9
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1123.6 1000 61.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1123.2 1004 61.3
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1122.8 1003 61.3
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1122.1 1002 61.2
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 999 61.1
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1120.5 1000 60.4
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1120.5 1009 61.9
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1119.0 1002 61.3
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1114.0 1009 60.3
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1114.0 1006 60.6
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1114.0 1009 63.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1112.1 1037 62.5
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1111.7 1003 61.0
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1110.1 1023 59.7
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1110.1 1007 60.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1108.6 1003 59.8
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1108.6 1007 61.8
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1108.2 1001 63.6
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1104.7 1004 61.4
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 1001 63.0
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1101.3 1003 69.0
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1101.3 1011 59.2
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1100.9 1000 60.4
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1099.0 1008 60.6
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1098.6 981 65.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1095.9 1038 58.9
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1095.5 1028 59.0
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1095.1 981 60.8
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1095.1 1000 60.3
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1094.3 999 63.6
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1092.8 977 65.0
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1092.0 1029 58.7
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1091.3 1007 60.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1087.4 1008 59.7
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1087.0 1000 60.7
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1085.9 1009 59.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1085.9 1000 65.5
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1085.1 1013 58.7
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1083.6 996 60.0
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1080.9 1003 68.4
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1079.7 1021 59.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1078.9 1008 59.2
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1077.0 1004 61.7
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 6.8e-312 1073.9 1002 62.2
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 1.4e-311 1073.2 1003 61.7
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 6.1e-311 1070.8 1007 58.8
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 6.1e-311 1070.8 1004 62.5
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 8.8e-310 1067.0 1100 56.2
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 2.5e-309 1065.4 1006 63.1
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 3.7e-308 1061.6 1029 61.9
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 8.2e-308 1060.4 1004 62.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 8.2e-308 1060.4 1016 61.6
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.8e-307 1059.3 1016 61.5
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 1.8e-307 1059.3 999 57.7
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 3.1e-307 1058.5 1019 61.4
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 4.1e-307 1058.1 949 61.1
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 4.5e-306 1054.7 1055 55.4
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 1.0e-305 1053.5 981 58.9
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.0e-305 1053.5 866 65.1
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 3.2e-304 1048.5 995 58.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 5.2e-302 1041.2 1004 57.4
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 4.4e-301 1038.1 955 64.8
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 1.6e-298 1029.6 994 60.5
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 2.0e-298 1029.2 996 60.5
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 4.5e-298 1028.1 960 63.3
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.7e-297 1026.2 993 56.6
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 7.2e-296 1020.8 963 57.9
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 7.2e-288 994.2 999 55.5
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.8e-286 989.6 986 55.7
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 4.0e-286 988.4 593 82.0
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.1e-283 980.3 925 57.7
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.4e-283 979.9 1000 55.2
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 5.4e-275 951.4 1011 51.8
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.0e-274 949.5 897 57.9
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 4.1e-259 898.7 994 52.6
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 3.3e-256 889.0 838 60.4
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 5.6e-256 888.3 840 57.1
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.3e-248 862.4 500 81.6
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 3.8e-244 849.0 1008 49.8
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 6.4e-244 848.2 1030 50.0
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 4.6e-242 842.0 1010 51.0
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 7.3e-240 834.7 998 46.1
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.1e-238 830.9 835 59.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 5.8e-221 771.9 979 45.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.9e-211 740.3 813 52.6
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.1e-174 618.2 384 76.3
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 4.1e-174 616.3 382 76.4
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.2e-167 594.0 341 80.9
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.7e-165 587.0 352 80.1
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 2.5e-163 580.5 768 46.4
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.6e-162 577.8 361 75.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 8.3e-151 538.9 465 62.4
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.1e-145 521.9 676 49.3
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.3e-131 472.6 637 47.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 2.5e-123 447.6 305 70.5
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.4e-121 441.8 776 38.3
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.9e-119 434.1 1001 38.6
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.9e-115 421.4 979 32.4
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.6e-109 401.7 297 68.4
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 4.6e-93 347.1 633 39.8
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.3e-91 340.9 1029 32.2
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 6.5e-87 326.6 551 44.3
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 4.3e-83 313.9 571 37.8
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.6e-69 267.7 165 75.8
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.8e-63 247.7 240 65.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.6e-51 208.4 327 40.7
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.1e-45 188.7 147 76.9
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 3.2e-41 174.9 104 78.8
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.2e-35 156.4 107 66.4
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.6e-35 155.2 115 73.0
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.2e-34 152.1 106 69.8
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 5.2e-20 104.4 78 65.4
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 4.3e-14 84.7 77 59.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.6e-14 84.3 86 52.3
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 6.2e-13 80.9 69 69.6
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.4e-12 79.7 86 51.2
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 2.6e-11 75.5 69 49.3
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.7e-10 72.8 94 47.9
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.9e-10 72.0 52 73.1
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.3e-07 63.2 52 61.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 8.7e-07 60.5 43 67.4


User provided reference genes

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