Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 1.3e-251 872.5 413 100.0
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 6.1e-241 837.0 413 94.4
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 5.7e-239 830.5 413 93.7
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.3e-214 749.6 428 83.6
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.7e-214 749.2 437 83.3
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.7e-203 712.6 414 81.4
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 5.1e-195 684.5 437 75.7
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 1.3e-190 669.8 365 85.5
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 4.1e-176 621.7 414 69.6
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.2e-175 620.2 365 75.1
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.2e-172 610.1 369 75.6
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 1.6e-172 609.8 375 73.1
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 1.3e-171 606.7 369 74.8
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 7.4e-170 600.9 368 74.2
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 2.2e-169 599.4 369 73.7
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 3.7e-169 598.6 418 68.2
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 6.3e-169 597.8 307 90.9
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 8.2e-169 597.4 403 69.2
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 1.1e-168 597.0 385 71.2
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.8e-168 596.3 362 72.9
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 2.4e-168 595.9 398 68.3
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 2.4e-168 595.9 364 73.4
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 4.1e-168 595.1 367 71.9
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 9.0e-168 594.0 364 74.2
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 9.0e-168 594.0 365 72.6
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 1.2e-167 593.6 365 74.0
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.5e-167 591.7 367 73.0
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 4.5e-167 591.7 378 71.4
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 5.9e-167 591.3 393 70.7
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 1.0e-166 590.5 364 74.2
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.0e-166 590.5 368 71.7
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 2.2e-166 589.3 369 71.8
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 3.8e-166 588.6 474 60.1
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 8.5e-166 587.4 407 65.6
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.1e-165 587.0 367 72.2
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 2.5e-165 585.9 373 69.4
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 4.2e-165 585.1 370 71.4
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 5.5e-165 584.7 367 72.8
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 9.4e-165 583.9 375 70.9
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 9.4e-165 583.9 367 71.4
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 2.7e-164 582.4 405 66.7
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 2.7e-164 582.4 367 72.2
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.6e-164 582.0 367 72.5
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 4.6e-164 581.6 369 70.5
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 6.1e-164 581.3 373 70.2
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 2.3e-163 579.3 369 71.0
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 5.1e-163 578.2 389 67.9
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 8.8e-163 577.4 397 69.5
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 1.1e-162 577.0 397 65.5
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 2.0e-162 576.2 366 71.0
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 2.2e-161 572.8 386 68.1
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.8e-161 572.4 412 64.6
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 2.8e-161 572.4 371 70.4
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 2.8e-161 572.4 404 67.1
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 6.3e-161 571.2 418 63.9
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.1e-160 570.5 405 67.4
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 1.1e-160 570.5 369 71.0
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 1.4e-160 570.1 398 65.1
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 2.4e-160 569.3 367 70.3
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 3.1e-160 568.9 412 64.8
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 2.0e-159 566.2 413 64.4
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 2.6e-159 565.8 366 71.6
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 3.4e-159 565.5 366 70.8
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 7.7e-159 564.3 367 70.0
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 2.2e-158 562.8 367 70.8
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 5.0e-158 561.6 400 66.5
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 6.5e-158 561.2 393 64.9
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 1.9e-157 559.7 408 64.7
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 2.5e-157 559.3 368 67.7
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 3.2e-157 558.9 408 64.7
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 4.2e-157 558.5 367 70.8
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 2.1e-156 556.2 345 72.8
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 4.7e-156 555.1 364 68.1
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 4.7e-156 555.1 368 68.2
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 1.4e-155 553.5 394 66.0
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 3.0e-155 552.4 368 67.1
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 5.7e-154 548.1 377 69.2
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 5.7e-154 548.1 376 67.8
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 3.7e-153 545.4 367 67.0
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 8.2e-153 544.3 394 62.2
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 3.1e-152 542.3 378 67.2
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 1.7e-150 536.6 366 67.2
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 2.9e-150 535.8 330 74.5
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 5.0e-150 535.0 367 66.8
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.2e-149 532.3 365 66.8
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 5.5e-149 531.6 366 65.0
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 3.0e-147 525.8 347 71.2
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 3.0e-147 525.8 382 66.8
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 3.3e-146 522.3 364 66.8
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 6.5e-142 508.1 350 65.7
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 2.5e-141 506.1 332 69.0
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 5.5e-133 478.4 336 65.8
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.6e-132 476.9 306 70.9
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 6.1e-132 474.9 367 58.9
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.8e-131 473.4 363 59.2
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 2.7e-127 459.5 367 57.8
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 5.9e-127 458.4 291 69.1
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.5e-125 453.8 376 54.3
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.0e-123 447.6 368 53.8
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.6e-119 433.7 277 70.8
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 7.8e-119 431.4 380 53.4
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 1.6e-111 407.1 260 73.5
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 1.0e-110 404.4 368 50.8
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 2.7e-103 379.8 226 76.5
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 2.7e-103 379.8 281 66.5
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 3.3e-93 346.3 366 47.3
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 2.4e-80 303.5 378 44.4
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.7e-78 295.0 322 50.0
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 7.6e-74 282.0 241 58.9
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 7.9e-63 245.4 186 58.6
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.8e-54 217.6 194 55.2
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.8e-54 217.6 468 31.4
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.2e-49 200.7 236 41.5
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.7e-44 184.5 129 62.0
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.2e-31 141.7 102 56.9
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 2.2e-25 120.9 204 35.8
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.0e-22 112.1 90 61.1
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.2e-18 98.6 62 74.2
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 7.7e-18 95.9 59 72.9
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 5.0e-17 93.2 72 52.8
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 2.5e-16 90.9 65 60.0
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.8e-15 87.4 61 65.6
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 1.2e-13 82.0 51 68.6
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 1.8e-11 74.7 43 72.1
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.6e-07 61.6 48 50.0
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.3e-06 57.8 74 48.6


User provided reference genes

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