Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.4e-128 462.2 242 100.0
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.4e-91 340.1 225 78.7
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.3e-83 311.6 243 66.7
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 3.8e-81 305.4 235 71.1
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 7.1e-80 301.2 224 72.8
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.1e-78 295.0 210 70.0
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 4.8e-76 288.5 225 70.2
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 6.2e-76 288.1 203 70.0
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 3.9e-70 268.9 164 88.4
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.5e-69 266.9 238 60.9
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 9.6e-69 264.2 220 60.9
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 4.5e-66 255.4 211 63.0
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.0e-65 254.2 224 58.5
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 1.0e-65 254.2 216 59.7
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.3e-65 253.8 147 93.9
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 1.7e-65 253.4 211 60.7
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 2.2e-65 253.1 206 60.2
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 2.2e-65 253.1 216 58.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 4.9e-65 251.9 223 60.5
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 6.5e-65 251.5 222 58.1
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.9e-64 250.0 223 60.5
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 3.2e-64 249.2 223 60.1
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 3.2e-64 249.2 216 58.8
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 3.2e-64 249.2 201 59.7
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 3.2e-64 249.2 209 62.7
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 3.2e-64 249.2 207 60.4
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 4.2e-64 248.8 204 62.3
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.5e-64 248.4 243 57.2
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 7.1e-64 248.1 218 59.6
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 9.3e-64 247.7 215 57.7
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 1.6e-63 246.9 206 61.2
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.1e-63 246.5 207 61.8
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 3.5e-63 245.7 201 61.7
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 4.6e-63 245.4 207 61.8
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.0e-62 244.2 218 58.3
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 1.3e-62 243.8 204 61.3
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 2.3e-62 243.0 226 58.8
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 2.3e-62 243.0 222 54.1
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 3.0e-62 242.7 223 60.1
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 3.0e-62 242.7 206 58.3
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.9e-62 242.3 205 58.5
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 8.7e-62 241.1 217 57.1
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.5e-61 240.4 212 58.0
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 3.3e-61 239.2 206 59.2
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 3.3e-61 239.2 216 57.4
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 4.3e-61 238.8 224 54.9
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 4.3e-61 238.8 205 56.1
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 5.7e-61 238.4 206 60.2
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 7.4e-61 238.0 210 60.0
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 9.6e-61 237.7 218 55.5
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 1.6e-60 236.9 219 56.2
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 4.8e-60 235.3 201 56.7
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 6.2e-60 235.0 228 55.7
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-59 233.4 242 50.8
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 5.3e-59 231.9 224 52.7
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 2.0e-58 229.9 207 54.1
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.5e-58 228.8 208 57.7
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 5.8e-58 228.4 218 53.2
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.8e-58 228.4 207 56.0
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.7e-57 226.9 221 52.5
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.7e-57 226.9 230 54.3
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 2.9e-57 226.1 238 50.8
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 6.5e-57 224.9 218 50.9
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 1.1e-56 224.2 205 56.1
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 2.5e-56 223.0 217 55.3
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 3.2e-56 222.6 208 55.3
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 4.2e-56 222.2 214 54.2
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.5e-55 219.2 205 56.1
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 4.6e-55 218.8 226 52.7
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 7.9e-55 218.0 212 54.7
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 3.0e-54 216.1 208 53.4
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.1e-51 207.6 210 53.8
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 2.4e-51 206.5 206 52.4
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 5.3e-51 205.3 217 50.7
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 2.0e-50 203.4 131 79.4
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 3.4e-50 202.6 232 48.7
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 5.9e-50 201.8 238 49.2
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 2.5e-48 196.4 275 41.5
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 2.7e-47 193.0 250 45.2
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 3.6e-47 192.6 216 46.3
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 4.6e-47 192.2 243 46.1
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.0e-46 191.0 248 45.2
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 1.8e-46 190.3 250 43.6
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 3.0e-46 189.5 246 43.5
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 3.0e-46 189.5 211 49.8
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 3.9e-46 189.1 260 43.8
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 6.7e-46 188.3 211 49.3
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.1e-45 187.6 225 46.2
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 2.5e-45 186.4 249 43.4
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 3.3e-45 186.0 204 48.5
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 9.7e-45 184.5 213 46.5
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.7e-44 183.7 216 47.2
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 3.7e-44 182.6 255 40.8
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 4.8e-44 182.2 255 40.8
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 4.8e-44 182.2 255 40.8
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 6.3e-44 181.8 255 40.4
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 6.3e-44 181.8 255 40.4
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 1.1e-43 181.0 205 47.3
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.1e-43 181.0 220 45.5
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.4e-43 180.6 210 48.1
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 9.1e-43 177.9 184 47.3
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 9.1e-43 177.9 223 43.5
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.5e-42 177.2 256 40.6
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.7e-41 173.7 198 45.5
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 3.0e-38 162.9 203 45.8
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 2.6e-37 159.8 203 41.9
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.6e-34 150.6 201 43.3
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 3.8e-33 146.0 128 59.4
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 8.5e-33 144.8 213 43.2
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 8.5e-33 144.8 105 67.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-32 144.1 202 43.1
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.1e-31 140.2 200 41.0
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-30 137.5 200 40.5
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 5.2e-30 135.6 186 44.1
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 4.7e-23 112.5 154 42.2
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 1.0e-22 111.3 241 32.8
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.0e-22 111.3 225 33.3
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 6.8e-22 108.6 208 34.6
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 7.5e-21 105.1 214 32.7
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 4.8e-20 102.4 114 43.0
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 5.4e-19 99.0 237 30.4
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 5.9e-18 95.5 230 30.4
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 3.0e-14 83.2 100 44.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 4.0e-14 82.8 211 34.1
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.2e-12 77.0 212 33.5
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 5.9e-10 68.9 102 39.2
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 1.7e-09 67.4 112 35.7
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 2.9e-09 66.6 54 53.7
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 1.5e-08 64.3 121 34.7
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 7.3e-08 62.0 59 50.8
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 2.8e-07 60.1 209 27.8


User provided reference genes

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