Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 0.0e+00 1286.9 744 100.0
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 7.3e-309 1063.5 808 78.1
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.4e-291 1006.1 719 84.6
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.6e-207 725.7 623 70.5
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.1e-203 712.6 701 63.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.2e-202 710.7 711 62.4
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 8.9e-198 694.5 679 63.2
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.4e-171 606.7 649 58.9
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 5.6e-144 515.8 834 44.4
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 9.4e-107 392.1 419 54.2
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 4.7e-106 389.8 737 43.7
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.1e-102 376.7 702 44.0
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 2.2e-100 370.9 687 44.7
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 5.2e-97 359.8 702 42.3
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 8.8e-97 359.0 427 50.6
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 6.3e-95 352.8 470 48.5
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 8.3e-95 352.4 731 41.3
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.1e-94 352.1 710 46.2
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.1e-94 352.1 710 46.2
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.1e-94 350.5 428 50.0
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 3.5e-93 347.1 469 47.1
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 3.5e-93 347.1 666 42.6
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 7.7e-93 345.9 446 49.3
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.9e-92 344.0 796 38.8
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.5e-91 341.7 674 41.2
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.5e-91 341.7 758 41.6
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.5e-91 341.7 696 41.4
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.5e-91 341.7 696 42.0
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 2.5e-91 340.9 672 41.5
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 2.2e-87 327.8 439 48.5
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 8.3e-87 325.9 741 39.8
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 4.1e-86 323.6 709 40.1
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 4.1e-86 323.6 484 45.5
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 5.4e-86 323.2 408 49.8
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 5.4e-86 323.2 689 38.2
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.6e-85 321.6 443 45.6
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.0e-85 321.2 422 48.8
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 2.0e-85 321.2 732 38.7
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 5.9e-85 319.7 694 39.3
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 7.7e-85 319.3 447 47.9
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 5.0e-84 316.6 812 38.3
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.5e-83 315.1 434 47.2
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 3.3e-83 313.9 387 50.1
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 9.5e-83 312.4 521 44.0
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 1.6e-82 311.6 406 48.8
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 4.7e-82 310.1 731 39.3
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 4.7e-82 310.1 448 46.9
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 1.0e-81 308.9 434 47.0
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 9.8e-80 302.4 691 36.2
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.9e-79 300.8 432 46.3
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 6.4e-79 299.7 393 48.9
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 6.4e-79 299.7 424 46.2
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 3.2e-78 297.4 465 47.1
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 3.2e-78 297.4 415 48.4
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 9.2e-78 295.8 368 49.7
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 7.8e-77 292.7 506 42.1
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.0e-76 292.4 384 47.7
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 3.9e-76 290.4 693 38.8
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.9e-76 290.4 384 46.9
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 6.6e-76 289.7 622 41.2
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.3e-75 287.0 620 41.6
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 5.6e-75 286.6 464 45.0
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.6e-74 285.0 424 46.7
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 6.2e-74 283.1 604 37.3
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 2.0e-72 278.1 444 45.3
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 3.4e-72 277.3 367 46.9
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 3.4e-72 277.3 436 44.5
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 4.4e-72 276.9 501 40.5
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 7.5e-72 276.2 400 45.5
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 4.9e-71 273.5 240 62.1
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.9e-70 271.6 482 40.9
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 9.2e-70 269.2 440 43.0
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.6e-69 268.5 464 40.5
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.0e-69 268.1 624 38.5
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.0e-69 268.1 414 46.1
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.0e-69 268.1 455 42.4
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 5.0e-68 263.5 439 44.4
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.9e-67 261.5 443 44.5
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.5e-67 261.2 423 44.2
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 5.6e-67 260.0 479 40.1
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 9.5e-67 259.2 454 42.1
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.2e-66 258.8 526 38.8
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 3.6e-66 257.3 406 44.6
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 2.3e-65 254.6 453 41.1
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 5.2e-65 253.4 436 41.7
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 8.9e-65 252.7 536 40.5
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 2.0e-64 251.5 392 44.6
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 3.4e-64 250.8 386 45.6
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.4e-64 250.4 356 46.1
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.7e-63 248.4 703 36.1
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 1.7e-63 248.4 217 60.8
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.7e-63 248.4 712 36.5
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.9e-63 247.7 397 44.1
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 3.7e-63 247.3 394 44.7
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.4e-62 245.4 392 44.4
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.1e-62 243.8 504 38.5
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 4.1e-62 243.8 434 39.2
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.2e-61 242.3 410 41.5
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.1e-61 241.5 626 36.9
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.1e-61 241.5 421 41.1
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.1e-61 241.5 428 42.8
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 4.6e-61 240.4 374 43.3
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 6.0e-61 240.0 465 39.6
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 2.3e-60 238.0 214 59.3
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 8.6e-60 236.1 415 41.2
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.1e-59 235.7 386 43.5
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 3.3e-59 234.2 391 43.2
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 4.3e-59 233.8 758 32.6
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 4.3e-59 233.8 439 40.1
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 5.6e-59 233.4 379 43.8
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 3.6e-58 230.7 417 41.7
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.4e-57 228.8 436 40.6
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.2e-56 225.7 390 42.8
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.2e-56 225.7 390 42.8
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.7e-55 221.9 334 44.6
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.7e-55 220.7 486 38.1
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 9.2e-54 216.1 350 44.0
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 2.7e-53 214.5 180 61.1
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 3.5e-53 214.2 404 38.4
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.7e-52 211.8 409 41.1
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 6.6e-52 209.9 407 41.8
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 4.3e-51 207.2 179 64.2
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.6e-50 205.3 364 39.8
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.1e-50 204.9 393 40.2
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.1e-49 201.1 206 52.4
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.1e-49 201.1 158 63.9
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.5e-48 198.7 463 36.3
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.2e-47 194.9 284 41.5
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.4e-46 192.2 463 35.9
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 2.5e-43 181.4 532 34.0
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.2e-40 172.6 196 53.1
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.3e-39 169.1 469 33.5
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.1e-38 166.0 275 41.5
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 3.2e-38 164.5 210 47.1
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.3e-36 159.1 137 51.8
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 9.6e-35 152.9 172 48.8
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 9.0e-33 146.4 176 47.7
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 9.0e-33 146.4 229 39.7
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.4e-32 144.4 136 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 3.3e-27 127.9 431 30.6
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 6.2e-26 123.6 96 63.5
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 6.9e-25 120.2 119 54.6
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.1e-21 108.6 343 33.5
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 1.3e-20 105.9 97 60.8
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-15 89.4 82 56.1
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.7e-15 89.0 71 57.7
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 6.1e-13 80.5 111 37.8
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.1e-09 69.7 202 28.2
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 7.7e-08 63.5 89 43.8


User provided reference genes

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