Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.2e-236 823.2 553 100.0
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.3e-225 786.6 553 96.9
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.1e-224 783.5 556 96.8
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.0e-191 671.4 559 78.9
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.7e-182 643.3 558 74.4
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.4e-152 543.9 565 66.5
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 8.7e-150 534.6 563 65.9
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.7e-148 529.3 546 66.5
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.6e-146 523.1 555 67.0
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 6.3e-140 501.9 550 64.2
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 4.1e-139 499.2 542 64.2
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 2.6e-138 496.5 535 63.9
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.3e-134 483.4 542 53.3
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 5.1e-134 482.3 542 62.5
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.5e-133 480.7 528 53.8
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.3e-132 477.6 578 58.0
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 1.7e-132 477.2 550 62.0
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 2.4e-131 473.4 553 53.3
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 6.9e-131 471.9 553 58.8
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.0e-129 468.0 553 61.7
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.3e-129 467.6 548 60.8
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.7e-129 467.2 556 58.8
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 3.8e-129 466.1 569 60.5
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.1e-128 464.5 625 59.4
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 7.2e-128 461.8 555 62.0
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.4e-128 461.5 552 63.2
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 6.1e-127 458.8 546 60.4
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.4e-126 457.6 554 62.8
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 1.8e-126 457.2 547 62.7
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.3e-126 456.8 569 49.9
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 2.3e-126 456.8 551 63.2
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.3e-126 456.8 549 61.4
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 6.7e-126 455.3 525 62.7
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 1.1e-125 454.5 543 60.6
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.5e-125 454.1 585 59.8
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 2.6e-125 453.4 547 64.2
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 2.6e-125 453.4 548 61.3
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.3e-125 453.0 320 80.0
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 9.7e-125 451.4 567 56.6
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 1.3e-124 451.1 534 59.4
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.2e-124 450.3 530 58.3
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 2.2e-124 450.3 563 59.9
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 4.8e-124 449.1 550 59.6
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 6.3e-124 448.7 534 61.6
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.1e-123 448.0 535 64.5
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.8e-123 447.2 562 58.7
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 4.1e-123 446.0 559 60.3
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 4.5e-122 442.6 546 57.1
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.7e-121 440.7 591 56.9
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 5.0e-121 439.1 560 55.7
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 5.0e-121 439.1 538 62.3
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 8.5e-121 438.3 553 58.2
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.5e-120 437.6 553 60.4
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 7.2e-120 435.3 542 55.9
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 9.4e-120 434.9 529 60.9
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.2e-119 434.5 548 60.8
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.2e-119 434.5 547 58.1
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.6e-119 434.1 553 58.0
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 2.1e-119 433.7 581 58.5
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 2.1e-119 433.7 581 57.8
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 2.7e-119 433.3 539 58.6
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.7e-119 433.3 533 58.5
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 3.6e-119 433.0 556 49.1
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 1.0e-118 431.4 552 56.5
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.4e-118 431.0 536 59.9
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 8.8e-118 428.3 539 61.0
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 4.4e-117 426.0 529 60.1
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 5.7e-117 425.6 557 56.0
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 9.7e-117 424.9 550 60.2
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 4.8e-116 422.5 532 60.7
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 6.3e-116 422.2 548 53.5
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.8e-115 420.6 542 57.6
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.8e-115 420.6 573 56.5
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.8e-115 420.6 550 53.1
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.8e-115 420.6 545 57.2
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 3.1e-115 419.9 536 55.8
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-114 417.9 541 56.9
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 3.5e-114 416.4 545 56.9
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.3e-113 414.5 540 60.6
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.7e-113 414.1 546 55.3
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.7e-113 414.1 551 58.3
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 3.8e-113 412.9 532 57.7
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 6.5e-113 412.1 605 54.2
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 3.2e-112 409.8 535 56.6
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.2e-112 409.8 535 47.7
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 2.1e-111 407.1 542 55.9
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 4.7e-111 406.0 551 57.5
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 4.7e-111 406.0 543 55.6
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.4e-110 404.4 545 56.9
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.4e-110 404.4 564 61.5
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 5.2e-110 402.5 542 49.3
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.6e-109 400.2 534 55.6
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.6e-109 400.2 529 57.3
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 5.7e-109 399.1 514 47.9
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.7e-109 399.1 529 58.0
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 5.4e-107 392.5 535 56.1
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.0e-107 392.1 529 54.8
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 2.0e-106 390.6 575 55.8
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 3.8e-105 386.3 542 57.2
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-104 384.8 529 56.7
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.5e-104 384.4 529 58.0
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.2e-104 383.3 529 55.6
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.2e-103 381.3 533 54.8
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 6.8e-102 375.6 556 48.7
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 7.3e-96 355.5 534 54.9
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.6e-95 354.4 469 56.1
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 2.1e-95 354.0 534 53.4
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 4.0e-94 349.7 598 54.0
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 9.2e-91 338.6 350 72.3
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.7e-90 337.0 550 54.9
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 1.4e-86 324.7 278 66.2
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.2e-85 321.6 515 51.5
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 7.5e-77 292.4 518 40.3
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 6.6e-73 279.3 526 46.4
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.5e-72 278.1 164 89.0
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.5e-72 278.1 537 42.6
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 9.5e-72 275.4 489 40.1
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.4e-70 271.6 504 38.9
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 2.1e-63 247.7 576 34.0
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 6.8e-62 242.7 372 45.7
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 4.8e-55 219.9 125 91.2
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 1.1e-54 218.8 271 50.9
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 3.4e-53 213.8 251 49.0
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 4.4e-53 213.4 202 59.9
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.7e-52 211.5 213 58.2
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 2.3e-49 201.1 233 48.9
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 8.4e-44 182.6 247 49.4
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 5.3e-38 163.3 188 50.5
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 5.3e-38 163.3 188 50.5
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 9.0e-38 162.5 368 47.3
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 2.6e-37 161.0 237 41.8
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 6.3e-31 139.8 115 67.0
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.2e-27 127.1 149 52.3
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 2.1e-26 124.8 154 51.9
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 7.9e-26 122.9 117 53.8
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-19 102.4 62 80.6
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.4e-19 102.1 259 31.7
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 4.8e-15 87.0 74 66.2
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 8.2e-15 86.3 47 89.4
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.1e-14 85.9 88 56.8
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 4.1e-14 84.0 73 58.9
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 9.1e-14 82.8 67 68.7
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.2e-13 82.4 79 51.9
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 4.5e-13 80.5 62 66.1
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 5.0e-12 77.0 101 46.5
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.5e-08 65.5 69 52.2
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.3e-08 64.3 37 78.4
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.8e-07 61.2 76 52.6
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.8e-07 61.2 67 55.2


User provided reference genes

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