Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 1.4e-210 736.1 383 100.0
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 9.6e-180 633.6 383 89.3
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 4.4e-177 624.8 383 88.3
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 8.1e-163 577.4 384 82.8
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.7e-155 552.0 413 75.8
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.5e-132 476.9 454 63.7
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 3.4e-129 465.7 333 76.0
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.9e-128 462.6 410 66.3
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 3.2e-127 459.1 405 64.2
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.7e-126 456.1 320 76.2
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 6.1e-126 454.9 389 65.8
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.0e-125 454.1 388 68.3
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 1.4e-125 453.8 295 81.0
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 3.9e-125 452.2 352 72.4
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.5e-124 450.3 366 68.6
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 1.5e-124 450.3 393 65.9
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.5e-124 450.3 393 66.7
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 1.5e-124 450.3 299 80.3
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 3.3e-124 449.1 292 80.8
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 1.7e-123 446.8 389 65.3
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 4.1e-122 442.2 278 83.5
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 5.3e-122 441.8 406 62.3
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 7.0e-122 441.4 413 63.2
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 9.1e-122 441.0 411 60.8
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 1.2e-121 440.7 346 69.7
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 1.6e-121 440.3 388 64.4
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 2.6e-121 439.5 401 62.1
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 2.6e-121 439.5 346 69.7
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 5.9e-121 438.3 270 83.7
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 5.9e-121 438.3 270 83.7
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 5.9e-121 438.3 291 78.7
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.9e-121 438.3 398 63.8
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 7.7e-121 438.0 383 65.0
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 7.7e-121 438.0 347 70.3
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 1.3e-120 437.2 274 82.8
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 1.7e-120 436.8 389 65.3
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.7e-120 436.8 383 63.7
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 2.2e-120 436.4 360 66.9
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.2e-120 436.4 405 62.5
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 2.9e-120 436.0 381 63.5
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 3.8e-120 435.6 393 64.4
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.8e-120 435.6 383 63.4
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 5.0e-120 435.3 407 64.1
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 6.5e-120 434.9 404 62.6
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.5e-120 434.9 404 62.6
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 8.5e-120 434.5 296 77.4
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 1.5e-119 433.7 360 66.4
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 1.9e-119 433.3 274 81.8
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 1.9e-119 433.3 290 79.0
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 4.2e-119 432.2 390 63.1
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 5.5e-119 431.8 383 62.9
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 5.5e-119 431.8 385 64.4
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 7.2e-119 431.4 387 63.8
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 1.6e-118 430.3 320 71.2
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 1.6e-118 430.3 382 65.2
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 2.1e-118 429.9 281 79.4
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 1.0e-117 427.6 383 63.4
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 1.4e-117 427.2 267 82.4
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.4e-117 427.2 382 64.1
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 3.0e-117 426.0 412 60.9
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.0e-117 426.0 396 61.9
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 6.7e-117 424.9 322 72.4
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 1.1e-116 424.1 272 81.2
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 2.0e-116 423.3 288 77.4
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 2.0e-116 423.3 386 64.0
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 1.3e-115 420.6 301 73.8
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 1.3e-115 420.6 386 62.7
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 2.8e-115 419.5 400 63.5
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 8.2e-115 417.9 289 76.5
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.8e-114 416.8 259 83.4
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 2.4e-114 416.4 394 62.7
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 2.4e-114 416.4 291 75.6
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 4.1e-114 415.6 295 73.2
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 4.1e-114 415.6 290 76.2
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 7.0e-114 414.8 295 74.6
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 3.5e-113 412.5 247 86.2
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 3.5e-113 412.5 286 76.2
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 4.5e-113 412.1 385 62.1
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 2.2e-112 409.8 322 71.1
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 2.2e-112 409.8 286 76.2
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 3.6e-110 402.5 290 74.1
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 9.8e-108 394.4 268 76.5
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.3e-107 394.0 281 72.6
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.8e-107 392.9 268 76.1
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 6.3e-107 391.7 269 74.7
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 6.3e-107 391.7 297 72.7
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 1.7e-104 383.6 319 66.5
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 3.8e-104 382.5 262 80.2
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 6.5e-104 381.7 279 72.0
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 1.9e-103 380.2 285 73.3
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 9.4e-103 377.9 335 65.4
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.2e-100 370.9 290 71.7
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 1.0e-96 357.8 269 69.1
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 1.7e-96 357.1 410 52.9
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 2.9e-96 356.3 306 67.0
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.1e-95 354.4 415 51.8
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 4.3e-95 352.4 255 72.9
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 1.6e-94 350.5 268 68.3
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.3e-91 340.9 268 64.2
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.4e-90 336.7 206 82.5
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 1.2e-89 334.3 376 54.0
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 5.0e-88 328.9 215 79.5
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 6.2e-86 322.0 229 73.8
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 8.0e-86 321.6 348 57.8
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 9.8e-84 314.7 177 93.2
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 5.0e-80 302.4 297 59.9
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 6.2e-78 295.4 271 56.1
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 2.0e-76 290.4 263 56.7
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 3.4e-76 289.7 390 50.0
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 2.3e-72 276.9 429 47.3
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.9e-71 273.9 259 57.1
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 7.3e-71 271.9 187 73.3
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 1.6e-70 270.8 291 54.0
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 4.9e-67 259.2 157 84.7
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 3.9e-64 249.6 309 48.5
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 1.9e-58 230.7 181 66.9
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.6e-57 226.1 129 88.4
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 6.0e-57 225.7 260 52.7
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 2.0e-52 210.7 130 83.8
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 3.4e-52 209.9 136 78.7
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 1.1e-47 194.9 123 84.6
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.8e-40 171.0 108 78.7
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.1e-38 164.1 251 37.5
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 7.6e-28 129.0 179 43.6
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 5.5e-26 122.9 145 55.9
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-25 120.2 187 38.5
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 5.7e-23 112.8 90 67.8
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 2.0e-12 77.8 41 97.6
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 1.9e-10 71.2 66 65.2
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 2.1e-09 67.8 245 24.1
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 7.9e-09 65.9 36 88.9
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 6.7e-08 62.8 47 66.0
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 8.8e-08 62.4 51 60.8


User provided reference genes

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