Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.3e-40 168.3 110 100.0
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 6.2e-31 137.5 113 89.4
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.5e-29 132.9 112 87.5
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 1.7e-28 129.4 123 74.8
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 5.4e-27 124.4 125 58.4
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 4.7e-23 111.3 124 55.6
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.4e-22 109.8 61 86.9
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 1.2e-18 96.7 61 73.8
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 6.0e-18 94.4 61 72.1
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.0e-17 93.6 61 73.8
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.0e-17 93.6 61 73.8
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.0e-17 92.0 61 72.1
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-16 90.1 61 68.9
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-16 90.1 61 68.9
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 1.1e-16 90.1 61 68.9
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 70.5
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 68.9
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 68.9
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 68.9
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 68.9
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 68.9
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.9e-16 89.4 60 71.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 68.9
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.9e-16 89.4 61 72.1
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.5e-16 89.0 61 68.9
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 3.3e-16 88.6 61 68.9
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 3.3e-16 88.6 61 67.2
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 4.3e-16 88.2 61 68.9
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 4.3e-16 88.2 61 68.9
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 4.3e-16 88.2 61 67.2
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 4.3e-16 88.2 61 67.2
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 4.3e-16 88.2 61 68.9
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 5.6e-16 87.8 61 67.2
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 9.6e-16 87.0 61 67.2
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 9.6e-16 87.0 61 67.2
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 9.6e-16 87.0 61 67.2
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.2e-15 86.7 61 67.2
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.2e-15 86.7 61 68.9
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.2e-15 86.7 59 69.5
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.2e-15 86.7 61 63.9
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 1.6e-15 86.3 54 77.8
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.6e-15 86.3 61 70.5
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.1e-15 85.9 61 65.6
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.1e-15 85.9 61 65.6
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 2.1e-15 85.9 61 70.5
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.1e-15 85.9 61 63.9
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 2.8e-15 85.5 61 68.9
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.8e-15 85.5 61 68.9
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.8e-15 85.5 61 68.9
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 2.8e-15 85.5 61 67.2
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 3.6e-15 85.1 61 67.2
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.6e-15 85.1 61 70.5
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.7e-15 84.7 61 67.2
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.7e-15 84.7 61 68.9
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 4.7e-15 84.7 58 69.0
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.2e-15 84.3 61 67.2
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.2e-15 84.3 61 67.2
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 6.2e-15 84.3 61 67.2
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 6.2e-15 84.3 61 68.9
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 8.1e-15 84.0 60 70.0
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.1e-14 83.6 61 68.9
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.4e-14 83.2 61 68.9
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 1.4e-14 83.2 58 67.2
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 2.4e-14 82.4 59 64.4
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 2.4e-14 82.4 60 66.7
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.1e-14 82.0 103 50.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 3.1e-14 82.0 61 62.3
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 4.0e-14 81.6 62 71.0
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 5.2e-14 81.3 61 65.6
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 5.2e-14 81.3 61 65.6
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 5.2e-14 81.3 61 68.9
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 5.2e-14 81.3 61 68.9
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 5.2e-14 81.3 61 65.6
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 5.2e-14 81.3 61 65.6
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 6.9e-14 80.9 62 69.4
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 6.9e-14 80.9 62 69.4
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 6.9e-14 80.9 62 69.4
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 6.9e-14 80.9 62 69.4
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 6.9e-14 80.9 62 69.4
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 9.0e-14 80.5 61 67.2
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.2e-13 80.1 61 63.9
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.5e-13 79.7 61 62.3
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-13 79.7 62 67.7
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 2.0e-13 79.3 61 65.6
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 2.0e-13 79.3 59 62.7
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 2.6e-13 79.0 59 64.4
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 2.6e-13 79.0 61 63.9
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 3.4e-13 78.6 61 65.6
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 3.4e-13 78.6 61 63.9
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 7.6e-13 77.4 61 62.3
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 7.6e-13 77.4 61 62.3
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.3e-12 76.6 61 60.7
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 2.2e-12 75.9 62 66.1
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 2.2e-12 75.9 62 66.1
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.2e-12 75.9 50 70.0
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.9e-12 75.5 62 66.1
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 3.8e-12 75.1 61 62.3
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 6.4e-12 74.3 61 57.4
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 3.2e-11 72.0 52 69.2
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 3.2e-11 72.0 52 69.2
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 3.2e-11 72.0 52 69.2
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 3.2e-11 72.0 61 57.4
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 2.1e-10 69.3 62 54.8
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.6e-10 68.2 64 60.9
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 2.3e-09 65.9 52 61.5
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 1.1e-08 63.5 48 64.6
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 1.1e-08 63.5 48 64.6
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 9.6e-08 60.5 59 49.2
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.8e-07 58.2 50 54.0
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.4e-06 55.8 53 39.6
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 3.1e-06 55.5 57 42.1
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.1e-06 55.5 54 38.9
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.1e-06 55.5 53 43.4
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 4.0e-06 55.1 48 54.2
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 5.3e-06 54.7 53 41.5
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 9.0e-06 53.9 54 38.9
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 9.0e-06 53.9 53 39.6


User provided reference genes

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