Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 1.8e-159 565.8 289 100.0
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 2.0e-150 535.8 289 93.1
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 6.4e-136 487.6 289 84.1
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 2.4e-135 485.7 289 82.4
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 4.0e-114 415.2 402 58.2
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 1.4e-87 327.0 288 55.9
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 2.7e-86 322.8 288 54.9
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.8e-85 320.1 288 56.9
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 3.0e-85 319.3 288 57.3
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 1.1e-84 317.4 289 57.4
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 6.9e-82 308.1 288 55.2
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 2.6e-81 306.2 290 56.2
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 1.7e-80 303.5 287 56.1
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 3.8e-80 302.4 288 53.5
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 8.5e-80 301.2 289 54.0
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 2.5e-79 299.7 288 54.5
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 1.2e-78 297.4 253 59.3
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 2.7e-78 296.2 172 86.6
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 4.7e-78 295.4 288 54.2
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 4.7e-78 295.4 289 55.4
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 7.9e-78 294.7 289 53.3
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 3.0e-77 292.7 289 52.2
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 6.7e-77 291.6 288 54.2
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 8.8e-77 291.2 289 53.3
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.5e-76 290.4 289 51.6
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 3.3e-76 289.3 289 52.2
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 7.4e-76 288.1 288 51.4
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 1.7e-75 287.0 261 57.5
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 6.3e-75 285.0 285 51.6
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 8.2e-75 284.6 288 51.7
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 1.8e-74 283.5 292 54.8
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 4.1e-74 282.3 288 51.4
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 1.5e-73 280.4 291 52.2
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 5.9e-73 278.5 148 95.3
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 7.7e-73 278.1 288 50.3
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 6.5e-72 275.0 290 50.3
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.4e-71 273.9 276 52.2
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 2.1e-70 270.0 289 48.4
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 3.6e-70 269.2 296 48.6
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 4.7e-70 268.9 290 51.7
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 1.1e-68 264.2 288 50.3
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.3e-68 262.7 293 52.2
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 5.7e-68 261.9 288 48.3
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 2.2e-67 260.0 291 48.5
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 2.8e-67 259.6 273 50.9
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 6.3e-67 258.5 290 49.0
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 8.2e-67 258.1 295 49.8
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.1e-66 257.7 289 46.7
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.4e-66 257.3 289 46.7
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 1.8e-66 256.9 288 46.2
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.8e-66 256.9 294 49.7
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 3.1e-66 256.1 276 51.8
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 1.2e-65 254.2 243 53.1
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 7.7e-65 251.5 293 50.9
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.0e-64 251.1 289 46.0
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 8.5e-64 248.1 223 58.3
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 9.4e-63 244.6 226 55.3
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 2.1e-62 243.4 291 48.8
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 3.6e-54 216.1 266 47.0
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 2.6e-52 209.9 288 44.8
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 3.7e-51 206.1 223 51.6
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 7.2e-47 191.8 159 58.5
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 1.6e-41 174.1 187 48.1
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 7.8e-41 171.8 183 48.6
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 2.0e-33 147.1 166 48.8
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 1.4e-29 134.4 173 44.5
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.6e-28 130.2 151 50.3
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.6e-28 130.2 151 50.3
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 4.4e-28 129.4 111 55.9
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 2.7e-25 120.2 298 30.2
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.6e-25 119.4 107 58.9
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.6e-25 119.4 107 58.9
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 3.0e-24 116.7 260 30.8
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 1.2e-22 111.3 262 31.3
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.6e-22 110.9 239 34.3
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.6e-22 110.9 263 31.6
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 1.6e-22 110.9 256 32.4
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 2.8e-22 110.2 256 28.5
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.6e-22 109.8 256 32.4
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 3.6e-22 109.8 252 28.6
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 3.6e-22 109.8 272 29.4
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 8.1e-22 108.6 263 28.9
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 1.1e-21 108.2 272 28.3
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 1.8e-21 107.5 245 29.8
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 2.3e-21 107.1 260 29.2
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 2.3e-21 107.1 258 29.8
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 2.3e-21 107.1 255 29.0
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 4.0e-21 106.3 264 29.5
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 5.2e-21 105.9 263 28.9
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 5.2e-21 105.9 261 29.5
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 6.8e-21 105.5 266 28.9
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 6.8e-21 105.5 268 28.7
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 6.8e-21 105.5 261 28.7
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.2e-20 104.8 265 26.8
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 1.2e-20 104.8 258 29.5
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 1.5e-20 104.4 259 30.5
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 2.0e-20 104.0 254 30.3
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 2.6e-20 103.6 272 26.8
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 2.6e-20 103.6 262 29.4
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 3.4e-20 103.2 262 28.2
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 7.6e-20 102.1 265 30.6
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 1.3e-19 101.3 255 28.6
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 1.7e-19 100.9 299 30.1
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 2.2e-19 100.5 249 30.9
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 2.2e-19 100.5 274 27.4
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 4.9e-19 99.4 257 28.0
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 4.9e-19 99.4 109 44.0
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 4.9e-19 99.4 266 27.4
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 6.4e-19 99.0 290 26.9
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 8.3e-19 98.6 257 29.6
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 1.1e-18 98.2 259 29.7
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.1e-18 98.2 284 29.6
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 1.1e-18 98.2 253 28.9
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 1.4e-18 97.8 247 30.4
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 1.4e-18 97.8 253 28.5
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 1.9e-18 97.4 246 27.2
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.9e-18 97.4 281 26.3
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 2.4e-18 97.1 257 26.8
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 3.2e-18 96.7 285 25.6
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 4.1e-18 96.3 248 27.8
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 4.1e-18 96.3 271 25.5
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 7.1e-18 95.5 269 27.1
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 7.1e-18 95.5 281 26.0
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 7.1e-18 95.5 288 26.7
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 7.1e-18 95.5 287 27.5
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 7.1e-18 95.5 289 28.0
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 9.2e-18 95.1 256 29.3
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 1.2e-17 94.7 259 28.2
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 1.2e-17 94.7 257 28.8
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 1.2e-17 94.7 257 28.8
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 1.2e-17 94.7 264 29.5
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.6e-17 94.4 265 27.2
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.6e-17 94.4 255 29.4
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 1.6e-17 94.4 268 26.1
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 2.1e-17 94.0 259 27.8
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.1e-17 94.0 240 29.6
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 2.7e-17 93.6 240 27.5
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 2.7e-17 93.6 259 28.2
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 3.5e-17 93.2 253 28.9
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 3.5e-17 93.2 264 26.9
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 4.6e-17 92.8 267 28.5
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.3e-16 90.5 251 28.3
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 2.3e-16 90.5 263 27.4
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 2.3e-16 90.5 263 26.2
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 3.0e-16 90.1 270 27.4
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 3.0e-16 90.1 265 25.7
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 6.6e-16 89.0 270 27.0
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 6.6e-16 89.0 270 26.3
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 8.6e-16 88.6 292 27.4
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 8.6e-16 88.6 230 27.8
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 8.6e-16 88.6 292 26.0
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 1.9e-15 87.4 281 29.9
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.9e-15 87.4 264 27.3
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 2.5e-15 87.0 270 27.0
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 2.5e-15 87.0 255 27.1
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 2.5e-15 87.0 262 28.2
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 5.6e-15 85.9 287 25.4
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 7.3e-15 85.5 126 39.7
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 7.3e-15 85.5 248 26.2
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 7.3e-15 85.5 252 27.0
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 9.6e-15 85.1 279 23.3
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 1.6e-14 84.3 262 25.2
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.6e-14 84.3 266 27.1
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 3.6e-14 83.2 253 27.7
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 6.2e-14 82.4 252 28.2
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 5.2e-13 79.3 278 27.7
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 5.2e-13 79.3 269 25.7
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.2e-12 78.2 269 28.3
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.2e-12 78.2 212 27.8
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 2.6e-12 77.0 97 40.2
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 5.8e-12 75.9 202 26.2
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 1.3e-11 74.7 241 27.0
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 8.4e-11 72.0 270 27.8
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 2.4e-10 70.5 260 23.8
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 5.4e-10 69.3 111 36.9
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 9.3e-10 68.6 96 37.5
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 2.1e-09 67.4 89 37.1
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 3.5e-09 66.6 84 38.1
Mapoly0090s0038 Marchantia polymorpha HOM05D001193 ORTHO05D001016 6.0e-09 65.9 269 24.5
TPR.G14197 Trifolium pratense HOM05D001193 ORTHO05D001016 9.6e-07 58.5 265 26.0
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 1.3e-06 58.2 205 25.9


User provided reference genes

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