Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016751 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.1e-47 191.0 96 100.0
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 9.5e-28 126.7 95 68.4
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.7e-27 124.4 95 66.3
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 6.8e-26 120.6 82 73.2
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 7.5e-25 117.1 95 62.1
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 7.5e-25 117.1 95 65.3
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.2e-24 115.5 95 65.3
PGSC0003DMG400043692 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.7e-24 114.8 95 61.1
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 8.3e-24 113.6 79 69.6
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 8.3e-24 113.6 95 61.1
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.4e-23 112.8 95 60.0
PGSC0003DMG401014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.7e-22 108.6 82 69.5
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.7e-21 105.9 75 68.0
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 7.3e-20 100.5 75 66.7
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 9.5e-20 100.1 81 60.5
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.2e-19 99.8 75 64.0
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 1.6e-19 99.4 75 64.0
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.6e-19 99.4 75 65.3
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 1.6e-19 99.4 75 65.3
Solyc03g062810.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.6e-19 98.2 82 59.8
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 1.4e-18 96.3 81 58.0
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 6.8e-18 94.0 82 54.9
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 6.8e-18 94.0 81 58.0
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 2.0e-17 92.4 82 56.1
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 2.0e-17 92.4 75 62.7
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 2.0e-17 92.4 79 59.5
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 2.0e-17 92.4 75 60.0
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 2.6e-17 92.0 82 56.1
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 7.6e-17 90.5 78 57.7
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 1.3e-16 89.7 81 53.1
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 2.2e-16 89.0 75 62.7
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 2.9e-16 88.6 75 57.3
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.9e-16 88.6 75 57.3
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.9e-16 88.6 75 57.3
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 3.7e-16 88.2 75 57.3
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 3.7e-16 88.2 75 58.7
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 4.9e-16 87.8 79 54.4
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 6.4e-16 87.4 82 52.4
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 6.4e-16 87.4 82 52.4
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 8.3e-16 87.0 81 53.1
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 8.3e-16 87.0 81 50.6
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 8.3e-16 87.0 75 56.0
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 8.3e-16 87.0 82 53.7
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.1e-15 86.7 81 50.6
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 1.1e-15 86.7 81 50.6
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 1.1e-15 86.7 75 57.3
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 1.4e-15 86.3 79 57.0
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.4e-15 86.3 75 57.3
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 1.4e-15 86.3 75 56.0
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 2.4e-15 85.5 75 56.0
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 3.2e-15 85.1 81 54.3
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 4.1e-15 84.7 75 56.0
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 4.1e-15 84.7 75 57.3
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 4.1e-15 84.7 75 56.0
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 5.4e-15 84.3 86 52.3
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 7.1e-15 84.0 82 52.4
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 7.1e-15 84.0 82 52.4
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 7.1e-15 84.0 76 56.6
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 9.2e-15 83.6 82 52.4
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 9.2e-15 83.6 82 48.8
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.2e-14 83.2 76 52.6
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 1.6e-14 82.8 82 47.6
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 2.1e-14 82.4 82 47.6
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 2.7e-14 82.0 79 48.1
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 4.6e-14 81.3 75 56.0
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 4.6e-14 81.3 76 51.3
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 4.6e-14 81.3 81 50.6
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 6.0e-14 80.9 81 51.9
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 7.8e-14 80.5 81 54.3
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 1.0e-13 80.1 75 54.7
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 1.7e-13 79.3 81 53.1
Solyc03g096620.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.7e-13 79.3 110 48.2
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.7e-13 79.3 80 46.2
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 2.3e-13 79.0 73 49.3
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 3.9e-13 78.2 73 52.1
CAN.G913.4 Capsicum annuum HOM05D000541 ORTHO05D000818 5.1e-13 77.8 66 57.6
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 6.6e-13 77.4 81 43.2
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 6.6e-13 77.4 81 43.2
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 6.6e-13 77.4 81 48.1
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 2.5e-12 75.5 81 45.7
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 2.5e-12 75.5 73 52.1
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 3.3e-12 75.1 75 50.7
Solyc06g009250.2 Solanum lycopersicum HOM05D002077 ORTHO05D000818 7.3e-12 73.9 73 56.2
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 9.6e-12 73.6 83 45.8
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 9.6e-12 73.6 73 49.3
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 9.6e-12 73.6 76 46.1
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.2e-11 73.2 82 45.1
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.6e-11 72.8 71 52.1
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 1.6e-11 72.8 81 50.6
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 2.8e-11 72.0 74 45.9
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 2.8e-11 72.0 75 45.3
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 2.8e-11 72.0 73 46.6
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 3.6e-11 71.6 73 47.9
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 3.6e-11 71.6 74 45.9
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 4.7e-11 71.2 74 45.9
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 4.7e-11 71.2 83 44.6
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 4.7e-11 71.2 83 44.6
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 4.7e-11 71.2 83 44.6
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 4.7e-11 71.2 83 44.6
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 4.7e-11 71.2 83 44.6
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 4.7e-11 71.2 74 45.9
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 4.7e-11 71.2 74 45.9
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 1.1e-10 70.1 75 45.3
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.4e-10 69.7 76 43.4
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 2.4e-10 68.9 74 43.2
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 3.4e-09 65.1 74 40.5
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 4.4e-09 64.7 73 35.6
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 5.8e-09 64.3 74 40.5
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 7.6e-09 63.9 91 42.9
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 1.3e-08 63.2 52 57.7
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 1.7e-08 62.8 89 48.3
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.7e-08 62.8 89 48.3
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 4.9e-08 61.2 74 44.6
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 4.9e-08 61.2 90 46.7
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 6.4e-08 60.8 89 41.6
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 8.4e-08 60.5 89 48.3
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 8.4e-08 60.5 77 36.4
Sopen03g026740 Solanum pennellii HOM05D002077 ORTHO05D000818 1.1e-07 60.1 58 55.2
HPP92_008441 Vanilla planifolia HOM05D002077 ORTHO05D000818 1.1e-07 60.1 92 32.6
HPP92_008461 Vanilla planifolia HOM05D002077 ORTHO05D000818 1.1e-07 60.1 77 36.4
Thhalv10005418m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.4e-07 58.9 72 43.1
Thhalv10016006m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.4e-07 58.9 75 41.3
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 3.2e-07 58.5 76 44.7
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 4.2e-07 58.2 74 39.2
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 4.2e-07 58.2 72 37.5
Solyc01g015180.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.2e-06 56.6 73 45.2
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 3.5e-06 55.1 71 35.2


User provided reference genes

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