Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 3.9e-240 834.3 407 100.0
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.1e-239 832.8 407 99.8
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.3e-238 829.3 407 99.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.8e-235 817.8 407 96.6
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 8.5e-235 816.6 406 96.6
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.1e-234 816.2 407 96.6
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 3.3e-231 804.7 407 95.1
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 2.3e-224 781.9 406 91.4
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 2.8e-222 775.0 406 89.9
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 8.2e-222 773.5 406 89.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 3.1e-221 771.5 406 90.1
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.2e-220 769.6 404 90.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 7.7e-220 766.9 406 88.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 7.7e-220 766.9 404 89.9
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.0e-219 766.5 404 88.9
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.7e-219 765.8 406 89.9
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 2.2e-219 765.4 406 89.4
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 2.9e-219 765.0 407 89.2
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 2.9e-219 765.0 403 90.1
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.9e-219 765.0 406 89.2
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 3.8e-219 764.6 405 90.1
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 6.5e-219 763.8 406 89.4
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 6.5e-219 763.8 406 89.4
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.5e-218 761.9 404 88.9
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.5e-218 761.9 404 90.3
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 4.2e-218 761.1 406 88.7
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 5.5e-218 760.8 406 89.4
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 5.5e-218 760.8 406 89.4
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 9.4e-218 760.0 404 89.9
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 87.9
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 88.2
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 88.4
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 9.4e-218 760.0 404 89.9
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.2e-217 759.6 403 89.3
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.6e-217 759.2 403 89.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 88.7
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.7e-217 758.4 406 88.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 88.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 4.7e-217 757.7 407 88.5
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 88.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 88.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.0e-216 756.5 404 88.9
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 88.9
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.4e-216 756.1 404 89.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.8e-216 755.7 404 88.9
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 88.4
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.8e-216 755.7 403 88.6
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 88.2
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 3.0e-216 755.0 407 87.7
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.9e-216 754.6 406 88.4
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 3.9e-216 754.6 407 88.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.9e-216 754.6 404 88.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 5.2e-216 754.2 406 87.4
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 6.7e-216 753.8 408 88.2
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 8.8e-216 753.4 406 88.2
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.6e-215 751.9 406 87.4
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.3e-215 751.5 404 87.9
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 7.4e-215 750.4 407 88.7
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 9.7e-215 750.0 407 87.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 9.7e-215 750.0 404 87.9
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.3e-214 749.6 404 88.1
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 2.8e-214 748.4 406 87.9
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.7e-214 748.0 405 87.7
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 3.7e-214 748.0 404 87.4
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.3e-214 747.3 404 87.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.4e-213 746.1 404 87.1
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.4e-213 745.3 404 86.9
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.4e-213 745.3 419 86.6
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.1e-213 745.0 448 81.0
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 4.1e-213 744.6 406 86.7
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 9.1e-213 743.4 404 86.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 9.1e-213 743.4 404 86.6
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.6e-212 742.7 408 87.7
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.0e-212 742.3 398 88.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.5e-212 741.5 404 86.6
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 7.7e-212 740.3 407 86.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 7.7e-212 740.3 404 85.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.0e-211 740.0 404 87.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 1.0e-211 740.0 407 86.0
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.0e-211 740.0 406 86.0
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.2e-211 738.8 407 86.5
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 85.7
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 85.7
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 85.7
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 5.0e-211 737.6 419 84.2
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 8.5e-211 736.9 407 86.0
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.1e-210 736.5 431 83.1
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.9e-210 735.7 408 86.5
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 2.5e-210 735.3 407 85.5
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 3.2e-210 734.9 407 85.7
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 4.2e-210 734.6 405 85.2
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 9.4e-210 733.4 407 85.5
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 9.4e-210 733.4 405 84.9
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.2e-209 733.0 407 85.3
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.6e-209 732.6 406 84.5
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.6e-209 731.5 407 85.5
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 3.6e-209 731.5 406 84.7
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 6.1e-209 730.7 407 84.8
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.0e-208 729.9 407 85.3
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.4e-208 729.6 406 83.7
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.4e-208 729.6 450 80.2
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 2.3e-208 728.8 407 84.8
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 3.0e-208 728.4 408 85.5
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 6.7e-208 727.2 404 84.7
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 6.7e-208 727.2 408 85.0
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 6.7e-208 727.2 408 85.0
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.2e-207 726.5 406 84.7
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.5e-207 726.1 470 77.4
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.7e-206 722.6 406 83.3
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 7.0e-205 717.2 388 87.9
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.0e-204 715.7 515 70.5
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.7e-204 715.3 378 89.7
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 5.0e-203 711.1 447 76.3
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 6.5e-203 710.7 383 89.0
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 7.2e-202 707.2 382 88.2
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 2.0e-199 699.1 415 81.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 3.7e-198 694.9 408 81.4
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 7.7e-196 687.2 408 81.9
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 9.5e-194 680.2 356 90.7
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.2e-191 673.3 407 77.1
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 4.4e-191 671.4 357 88.8
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 2.2e-190 669.1 399 79.2
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.0e-187 660.2 406 79.3
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 8.6e-187 657.1 377 80.9
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 9.5e-186 653.7 356 86.2
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.3e-179 633.3 410 72.7
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.7e-179 632.9 412 72.6
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 5.4e-173 611.3 405 70.1
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.6e-172 609.8 406 70.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.1e-169 599.4 317 89.3
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.9e-165 586.3 387 71.8
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.6e-159 565.8 389 73.3
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.3e-155 553.5 407 69.3
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.3e-147 526.9 282 88.3
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.8e-145 518.5 310 83.2
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 3.8e-142 508.8 400 62.0
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 6.9e-128 461.5 255 85.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.5e-127 458.8 245 89.0
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.8e-126 455.7 369 61.2
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 2.4e-120 436.4 383 56.1
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 6.5e-118 428.3 238 85.3
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.2e-116 424.1 227 88.1
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 4.7e-108 395.6 239 79.9
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 3.0e-99 366.3 195 88.2
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.4e-82 309.7 419 42.7
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.2e-76 291.2 181 80.1
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.6e-76 290.8 390 44.4
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 5.9e-71 272.3 180 73.3
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.2e-58 231.5 141 75.9
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.5e-58 231.1 140 76.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 6.6e-54 215.7 124 81.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.4e-50 203.4 130 79.2
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.7e-20 103.6 58 77.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.4e-19 101.7 128 46.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 3.3e-13 80.5 328 24.1
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 4.3e-13 80.1 363 24.5


User provided reference genes

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