Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 0.0e+00 1188.3 572 100.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 0.0e+00 1166.8 572 97.9
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 0.0e+00 1162.9 572 97.6
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 0.0e+00 1120.5 572 94.1
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 0.0e+00 1119.8 572 94.1
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 0.0e+00 1112.8 551 96.7
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 0.0e+00 1111.7 551 96.6
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 0.0e+00 1108.2 572 93.0
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 0.0e+00 1105.5 572 93.2
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.3e-310 1068.1 573 89.2
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 6.8e-307 1056.6 573 88.3
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 6.8e-299 1030.0 573 85.9
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 2.1e-295 1018.5 556 86.9
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 2.1e-295 1018.5 556 86.9
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 7.8e-295 1016.5 553 87.2
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 561 85.9
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.8e-291 1005.4 549 87.4
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.1e-291 1004.6 543 87.8
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 4.0e-291 1004.2 562 84.9
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 560 84.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 3.4e-290 1001.1 572 83.9
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 9.9e-290 999.6 572 84.1
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.4e-288 995.0 549 86.0
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 2.4e-288 995.0 549 84.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 2.4e-288 995.0 585 81.9
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 3.2e-288 994.6 561 84.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 4.2e-288 994.2 549 86.0
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 5.4e-288 993.8 549 84.5
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 5.4e-288 993.8 552 85.3
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 7.1e-288 993.4 549 85.8
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 9.3e-288 993.0 561 84.7
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-287 992.6 549 86.0
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 3.5e-287 991.1 549 86.0
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 3.5e-287 991.1 549 85.4
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 7.8e-287 989.9 553 84.6
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 3.0e-286 988.0 549 84.9
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 6.6e-286 986.9 572 81.5
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 8.7e-286 986.5 549 85.1
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.1e-285 986.1 551 84.4
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.1e-285 986.1 569 83.1
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 1.9e-285 985.3 563 84.0
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.9e-285 985.3 549 84.7
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.9e-285 985.3 542 86.3
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.5e-285 984.9 551 84.4
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.5e-285 984.9 574 82.6
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 4.3e-285 984.2 590 81.2
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 4.3e-285 984.2 574 82.1
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 5.6e-285 983.8 551 84.0
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 7.3e-285 983.4 550 84.9
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 7.3e-285 983.4 557 83.8
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 7.3e-285 983.4 542 86.3
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.3e-284 982.6 549 84.3
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.6e-284 982.2 549 83.8
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 3.6e-284 981.1 549 84.0
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 3.6e-284 981.1 549 85.1
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 6.2e-284 980.3 549 84.7
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.2e-284 980.3 551 83.8
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.2e-284 980.3 542 86.2
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.2e-282 976.1 549 82.9
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 3.4e-282 974.5 556 83.6
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 4.5e-282 974.2 549 84.3
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 5.8e-282 973.8 549 83.1
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 5.8e-282 973.8 563 82.4
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.1e-280 969.5 549 83.1
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.4e-280 968.4 542 85.1
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 3.5e-279 964.5 549 82.3
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 3.5e-279 964.5 549 82.9
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 3.5e-279 964.5 549 83.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 4.6e-279 964.1 547 83.4
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 6.0e-279 963.8 551 82.9
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.8e-278 962.2 549 82.9
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 8.7e-278 959.9 549 82.1
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.1e-277 959.5 551 82.9
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 4.3e-277 957.6 551 82.8
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 2.1e-276 955.3 549 82.1
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-276 955.3 551 82.2
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.8e-276 954.1 552 83.0
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.5e-274 949.1 550 82.0
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 2.0e-274 948.7 575 80.0
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.6e-274 948.3 529 86.4
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 4.5e-274 947.6 550 80.7
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 5.8e-274 947.2 542 82.3
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.9e-272 942.2 560 79.3
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 2.4e-272 941.8 541 82.1
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.2e-271 939.5 557 80.4
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.2e-271 939.5 542 81.9
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.3e-270 935.3 549 80.7
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 6.7e-270 933.7 542 81.5
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 7.4e-269 930.2 541 81.0
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.5e-266 922.5 551 80.8
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 2.6e-266 921.8 553 80.7
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.4e-266 921.4 559 79.1
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.9e-265 917.5 549 79.4
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 7.1e-264 913.7 561 78.1
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 3.3e-261 904.8 562 79.0
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.0e-258 895.6 550 79.8
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.8e-257 891.3 555 76.8
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.5e-256 888.6 542 75.8
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 7.2e-256 887.1 572 75.7
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.0e-249 866.7 541 76.5
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-249 865.9 541 76.3
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 2.9e-249 865.1 543 76.2
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 4.2e-248 861.3 549 75.0
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 7.2e-248 860.5 551 73.9
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 7.2e-248 860.5 494 83.2
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 2.2e-241 839.0 551 74.0
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 2.5e-240 835.5 548 72.4
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.0e-238 830.1 563 74.4
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.3e-238 828.9 549 74.5
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 4.4e-237 824.7 455 87.3
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 8.5e-233 810.4 556 70.5
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.4e-230 803.1 556 68.9
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 6.7e-230 800.8 549 73.0
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 8.2e-228 793.9 506 75.3
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 6.1e-223 777.7 547 68.2
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.2e-221 773.5 424 87.0
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.8e-219 766.1 423 86.5
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.1e-215 752.7 543 66.9
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.2e-213 746.9 547 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.8e-207 725.7 548 64.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-203 713.4 550 65.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-203 713.4 550 65.1
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 3.6e-199 698.7 606 61.9
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 2.1e-167 593.2 330 85.2
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.1e-166 590.9 334 83.2
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.7e-164 583.6 561 58.1
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-145 520.8 292 84.9
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 5.3e-142 508.8 548 49.8
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.9e-131 473.8 309 74.4
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.3e-129 466.8 270 79.6
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 8.8e-121 438.3 334 66.2
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.3e-97 360.5 199 83.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.6e-90 337.8 501 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.6e-69 268.1 338 45.6
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 4.6e-69 266.5 133 97.0
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.9e-67 261.2 196 63.8
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 5.6e-59 233.0 139 80.6
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 8.7e-52 209.1 129 76.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 6.2e-50 203.0 137 70.8
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 9.0e-49 199.1 123 74.0
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-48 198.4 111 83.8
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.2e-47 194.5 127 72.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.2e-47 194.5 127 72.4
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.2e-45 188.7 120 72.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.2e-45 188.7 120 72.5
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 4.6e-45 186.8 109 73.4
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.3e-42 178.7 119 70.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.3e-42 178.7 119 70.6
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-42 177.9 119 69.7
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.5e-38 163.3 76 96.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.6e-37 161.8 95 74.7
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.0e-31 142.5 79 84.8
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 4.1e-25 120.6 118 50.8
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-24 118.6 86 69.8
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 7.7e-24 116.3 189 41.3
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 9.4e-22 109.4 60 81.7
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 7.4e-19 99.8 68 70.6
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 3.8e-15 87.4 63 68.3


User provided reference genes

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