Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 2.5e-95 352.1 173 100.0
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 6.8e-93 344.0 173 97.1
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.2e-83 312.4 179 87.2
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 5.3e-77 291.2 173 83.8
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 4.4e-76 288.1 142 98.6
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 6.2e-70 267.7 184 77.2
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 8.4e-67 257.3 179 75.4
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 2.8e-62 242.3 175 71.4
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 2.8e-62 242.3 175 71.4
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 8.1e-62 240.7 179 71.5
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 3.1e-61 238.8 176 69.3
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 4.0e-61 238.4 176 69.3
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 4.0e-61 238.4 182 66.5
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 1.5e-60 236.5 176 69.3
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 2.0e-60 236.1 182 68.7
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.6e-60 235.7 181 67.4
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.6e-60 235.7 181 67.4
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 3.4e-60 235.3 179 70.9
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 4.5e-60 235.0 183 68.3
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.3e-59 233.4 177 69.5
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 3.8e-59 231.9 176 68.2
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 4.9e-59 231.5 174 70.7
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 8.4e-59 230.7 176 67.6
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 8.4e-59 230.7 176 67.6
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.9e-58 229.6 188 64.9
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 2.5e-58 229.2 180 67.2
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 2.5e-58 229.2 176 68.2
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 3.2e-58 228.8 173 65.9
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 4.2e-58 228.4 173 65.3
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 5.5e-58 228.0 176 67.0
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 5.5e-58 228.0 176 66.5
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.2e-57 226.9 184 65.2
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 2.1e-57 226.1 173 65.3
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 2.7e-57 225.7 177 67.8
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 3.5e-57 225.3 181 66.3
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 4.6e-57 224.9 168 67.3
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 4.6e-57 224.9 176 64.8
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 6.0e-57 224.6 180 65.0
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 7.9e-57 224.2 177 67.2
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 1.0e-56 223.8 176 67.0
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.8e-56 223.0 185 65.9
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.8e-56 223.0 178 67.4
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 3.0e-56 222.2 176 67.6
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 5.1e-56 221.5 176 66.5
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.5e-55 219.9 179 64.8
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.9e-55 219.5 176 64.2
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 2.5e-55 219.2 174 67.2
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 2.5e-55 219.2 178 67.4
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 2.5e-55 219.2 177 66.7
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 3.3e-55 218.8 180 67.2
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 4.3e-55 218.4 176 65.3
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 4.3e-55 218.4 181 64.1
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 5.7e-55 218.0 177 66.1
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 5.7e-55 218.0 184 65.8
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 7.4e-55 217.6 185 65.4
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 9.6e-55 217.2 180 66.1
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 9.6e-55 217.2 180 66.1
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.3e-54 216.9 194 61.3
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.3e-54 216.9 180 67.8
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.6e-54 216.5 178 66.9
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 2.1e-54 216.1 183 66.1
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 2.1e-54 216.1 183 66.1
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 2.8e-54 215.7 179 65.9
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.8e-54 215.7 159 70.4
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 2.8e-54 215.7 184 65.2
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 4.8e-54 214.9 150 72.7
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 6.2e-54 214.5 176 64.8
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 6.2e-54 214.5 181 66.3
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 6.2e-54 214.5 181 66.9
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 8.2e-54 214.2 163 68.1
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 8.2e-54 214.2 176 65.9
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 8.2e-54 214.2 180 65.0
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.1e-53 213.8 182 65.9
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.4e-53 213.4 172 67.4
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 1.8e-53 213.0 163 67.5
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 1.8e-53 213.0 163 67.5
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 2.4e-53 212.6 150 72.0
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 2.4e-53 212.6 150 72.0
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 2.4e-53 212.6 177 66.1
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 3.1e-53 212.2 164 68.3
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 4.1e-53 211.8 184 64.1
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 5.3e-53 211.5 181 64.6
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 6.9e-53 211.1 175 64.0
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 6.9e-53 211.1 176 65.9
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 9.0e-53 210.7 165 66.7
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 9.0e-53 210.7 165 66.7
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 9.0e-53 210.7 165 66.7
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-52 210.3 156 69.2
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.2e-52 210.3 177 65.0
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.5e-52 209.9 185 64.3
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 2.0e-52 209.5 184 63.6
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 2.0e-52 209.5 177 63.8
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 5.8e-52 208.0 183 63.4
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 5.8e-52 208.0 179 64.2
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 7.6e-52 207.6 181 61.9
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.7e-51 206.5 167 64.1
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.9e-51 205.7 182 63.7
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 3.8e-51 205.3 175 66.3
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 6.5e-51 204.5 140 72.9
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.5e-50 202.6 182 63.7
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.2e-50 202.2 190 63.2
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 4.2e-50 201.8 163 63.8
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.1e-50 201.1 173 63.0
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.3e-50 200.7 182 59.3
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 4.6e-49 198.4 185 60.0
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 7.9e-49 197.6 216 51.9
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 3.0e-48 195.7 151 68.2
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.9e-47 193.0 289 43.9
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 2.5e-47 192.6 189 57.1
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.3e-47 191.8 288 43.8
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 5.7e-47 191.4 179 59.2
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 5.7e-47 191.4 167 62.9
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 4.8e-46 188.3 155 62.6
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.8e-46 188.3 113 78.8
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 1.5e-44 183.3 137 70.1
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.5e-44 183.3 145 64.1
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.0e-44 183.0 178 54.5
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 6.5e-43 177.9 140 67.1
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 5.5e-42 174.9 147 60.5
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 7.2e-42 174.5 181 55.2
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.0e-40 170.6 164 54.3
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 2.4e-37 159.5 216 48.6
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 4.1e-37 158.7 125 64.8
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 8.5e-35 151.0 166 49.4
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 4.7e-33 145.2 145 53.8
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.0e-32 144.1 87 80.5
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-32 143.7 87 79.3
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.0e-32 142.5 87 78.2
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-31 139.8 173 50.3
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 2.6e-31 139.4 82 84.1
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 4.4e-31 138.7 100 66.0
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.2e-30 136.3 82 79.3
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 5.9e-28 128.3 82 79.3
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 7.7e-28 127.9 120 51.7
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.9e-26 123.2 109 54.1
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 6.1e-25 118.2 87 70.1
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 6.3e-14 81.6 54 68.5
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 2.4e-13 79.7 54 72.2
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.1e-13 79.3 88 54.5
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 4.5e-12 75.5 94 50.0
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 7.7e-12 74.7 70 58.6
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.9e-11 72.8 106 47.2
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 8.5e-11 71.2 63 47.6
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 6.1e-09 65.1 73 49.3
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 1.4e-08 63.9 90 48.9
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 5.2e-08 62.0 50 62.0


User provided reference genes

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