Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.2e-131 472.2 228 100.0
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.0e-124 449.1 228 94.7
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.9e-114 416.0 229 87.8
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.5e-108 396.4 221 86.4
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-105 386.7 200 91.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.3e-104 383.3 199 91.0
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.8e-96 356.3 202 82.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 2.4e-85 319.3 216 69.4
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 6.9e-85 317.8 222 68.9
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.7e-81 305.8 225 65.3
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 6.1e-81 304.7 220 62.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 5.1e-80 301.6 227 63.9
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 6.7e-80 301.2 223 65.0
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 6.7e-80 301.2 152 93.4
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 8.7e-80 300.8 227 63.0
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.5e-79 299.3 224 64.7
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 7.4e-79 297.7 228 64.0
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 9.7e-79 297.4 226 61.5
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.3e-78 297.0 224 63.4
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.7e-78 295.4 227 65.2
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 8.2e-78 294.3 224 64.3
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.1e-77 293.9 227 63.9
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.4e-77 293.5 227 63.4
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 2.4e-77 292.7 227 63.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 4.1e-77 292.0 226 61.5
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 9.0e-77 290.8 227 65.6
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.2e-76 290.4 231 61.9
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.9e-76 288.1 228 63.2
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 7.7e-76 287.7 226 61.5
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.0e-75 287.3 227 63.9
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.3e-75 287.0 226 62.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 2.9e-75 285.8 227 63.4
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 3.8e-75 285.4 227 62.6
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 6.5e-75 284.6 227 63.9
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 6.5e-75 284.6 221 60.6
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.1e-74 283.9 228 63.6
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.4e-74 283.5 226 61.1
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 1.4e-74 283.5 227 63.0
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.9e-74 283.1 226 62.4
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.2e-74 282.3 221 62.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.2e-74 282.3 226 62.8
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.2e-74 282.3 225 62.7
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.2e-74 282.0 226 62.4
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.2e-74 282.0 227 61.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.5e-74 281.6 229 62.4
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 7.2e-74 281.2 223 61.9
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.2e-73 280.4 227 62.6
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.6e-73 280.0 228 59.6
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-73 279.6 226 62.4
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-73 279.6 226 62.4
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 6.1e-73 278.1 226 59.7
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 7.9e-73 277.7 228 59.2
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 7.9e-73 277.7 227 62.1
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 2.3e-72 276.2 228 58.8
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 5.1e-72 275.0 224 60.7
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.1e-71 273.9 224 59.8
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 4.3e-71 271.9 221 60.6
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 5.7e-71 271.6 226 60.2
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 5.7e-71 271.6 227 60.4
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 7.4e-71 271.2 222 55.4
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 9.7e-71 270.8 222 55.9
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.3e-70 270.4 222 55.0
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.8e-70 269.2 222 55.9
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 4.8e-70 268.5 222 55.4
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 4.8e-70 268.5 221 56.6
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 4.8e-70 268.5 227 60.4
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 6.3e-70 268.1 222 55.4
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 8.2e-70 267.7 226 60.2
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.1e-69 267.3 226 60.6
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.8e-69 266.5 222 55.4
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.8e-69 266.5 227 54.6
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.4e-69 266.2 222 59.0
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 5.3e-69 265.0 228 58.8
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 6.9e-69 264.6 232 58.6
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 9.1e-69 264.2 227 56.8
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.2e-68 263.8 222 54.5
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 1.5e-68 263.5 222 54.5
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.0e-68 263.1 227 59.0
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.4e-68 262.3 219 56.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.5e-68 261.9 228 58.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.5e-68 261.9 220 56.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.0e-67 260.8 222 55.4
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.0e-67 260.8 224 57.1
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.0e-67 258.5 225 56.0
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.5e-67 258.1 226 57.1
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 8.5e-67 257.7 222 55.4
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.5e-67 257.7 225 55.6
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.4e-66 256.9 222 54.5
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.2e-66 255.8 226 58.0
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 7.2e-66 254.6 227 56.4
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 3.6e-65 252.3 222 54.5
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.3e-62 243.8 230 55.2
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 3.7e-62 242.3 220 54.1
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-61 240.7 186 62.4
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.0e-59 231.9 213 57.3
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 4.1e-53 212.2 221 50.2
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.2e-52 210.7 223 49.8
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 2.0e-52 209.9 248 45.6
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 4.5e-52 208.8 219 51.6
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.0e-51 207.6 222 45.9
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.0e-51 207.6 221 52.0
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.5e-50 203.8 109 85.3
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 6.1e-49 198.4 237 47.3
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.4e-48 197.2 160 61.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.8e-48 196.8 237 46.8
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.7e-46 189.1 224 46.0
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.6e-44 183.7 220 43.6
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.2e-43 179.9 221 43.9
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.0e-43 178.7 248 42.3
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 6.5e-43 178.3 237 40.1
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.5e-42 176.4 248 43.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.5e-42 175.3 239 40.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 7.2e-42 174.9 168 47.0
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 7.2e-42 174.9 168 47.0
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-41 173.7 249 39.8
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.1e-41 171.8 227 42.3
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 8.0e-41 171.4 228 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.0e-40 171.0 226 43.4
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.0e-40 171.0 232 42.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 3.0e-40 169.5 261 37.5
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-40 169.5 222 45.5
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 3.0e-40 169.5 227 40.5
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 2.2e-38 163.3 260 37.7
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-38 162.9 224 46.0
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 4.9e-38 162.2 224 37.9
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-36 157.5 224 45.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.6e-36 157.1 235 40.0
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.0e-36 156.8 227 40.5
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.7e-36 156.4 225 39.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 4.2e-34 149.1 182 44.5
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.5e-34 147.9 259 35.5
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 8.0e-33 144.8 207 38.2
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 6.8e-32 141.7 227 35.2
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.2e-31 141.0 260 33.8
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 3.4e-31 139.4 222 35.1
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 3.4e-31 139.4 233 34.8
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 3.4e-31 139.4 145 47.6
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 6.3e-30 135.2 216 37.5
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.4e-29 133.3 150 47.3
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 3.2e-29 132.9 266 33.5
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 5.4e-29 132.1 257 33.9
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 7.0e-29 131.7 149 43.6
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 9.2e-29 131.3 151 42.4
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 9.2e-29 131.3 207 35.3
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-28 130.6 150 46.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.3e-27 126.7 145 44.8
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.9e-27 126.3 252 33.7
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 3.9e-27 125.9 153 42.5
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.5e-23 114.0 214 31.3
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.5e-23 114.0 162 40.7
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 9.8e-23 111.3 144 41.0
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 9.8e-23 111.3 100 51.0
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.2e-22 110.2 169 34.3
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.9e-22 109.8 127 47.2
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.4e-21 107.5 130 37.7
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.0e-20 103.6 213 36.2
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-14 84.0 76 51.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.7e-14 84.0 199 25.6
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 4.9e-14 82.4 101 38.6
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.1e-11 72.4 88 40.9
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.6e-09 67.4 194 27.8
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.1e-08 63.2 111 31.5
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.2e-08 62.4 78 37.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.0e-07 60.5 75 42.7
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.4e-07 59.7 73 41.1


User provided reference genes

Program Settings