Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 6.4e-174 614.0 315 100.0
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.6e-169 599.4 315 97.1
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 8.1e-169 597.0 315 96.8
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 3.9e-155 551.6 314 91.4
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 3.8e-150 535.0 345 82.9
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 4.2e-149 531.6 295 91.2
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.0e-147 526.9 301 90.0
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 5.9e-143 511.1 298 85.2
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 7.7e-143 510.8 294 87.4
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 8.5e-142 507.3 296 85.1
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.5e-141 505.8 312 83.3
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.5e-141 505.8 312 81.7
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.5e-141 505.8 293 85.3
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 4.2e-141 505.0 300 83.0
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 2.1e-140 502.7 328 78.0
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 2.7e-140 502.3 295 84.4
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.8e-139 499.6 284 85.9
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.3e-139 499.2 321 79.8
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 5.2e-139 498.0 286 86.4
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 6.7e-139 497.7 282 87.6
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 8.8e-139 497.3 303 82.8
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 4.4e-138 495.0 312 81.7
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 5.7e-138 494.6 293 81.6
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 7.4e-138 494.2 299 83.6
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 2.2e-137 492.7 294 84.0
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 2.8e-137 492.3 292 81.5
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 2.8e-137 492.3 283 86.6
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 2.8e-137 492.3 316 79.7
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 3.7e-137 491.9 288 81.6
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.7e-137 491.9 296 82.1
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.7e-137 491.9 323 78.0
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 4.8e-137 491.5 282 86.5
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.1e-136 490.3 290 84.1
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.4e-136 490.0 296 81.1
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 1.4e-136 490.0 304 78.3
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.8e-136 489.6 294 82.7
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.8e-136 489.6 294 82.7
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.8e-136 489.6 296 81.4
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.8e-136 489.6 284 85.9
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.4e-136 489.2 284 84.2
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 4.1e-136 488.4 289 85.1
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.1e-136 488.4 324 78.1
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 5.3e-136 488.0 296 81.8
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.1e-136 487.3 324 78.1
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 1.2e-135 486.9 291 83.8
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.2e-135 486.9 321 78.2
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.6e-135 486.5 292 81.8
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.6e-135 486.5 290 81.7
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 2.0e-135 486.1 294 82.3
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.0e-135 486.1 294 82.3
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 2.0e-135 486.1 291 83.8
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 2.0e-135 486.1 298 78.5
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 2.0e-135 486.1 285 84.9
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 2.0e-135 486.1 299 81.3
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.6e-135 485.7 294 82.3
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.6e-135 485.7 294 82.3
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 2.6e-135 485.7 307 79.2
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 3.5e-135 485.3 290 83.4
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 5.9e-135 484.6 294 82.0
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 7.7e-135 484.2 299 80.3
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 7.7e-135 484.2 315 76.8
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.3e-134 483.4 294 80.6
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 3.8e-134 481.9 291 83.2
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 6.5e-134 481.1 320 75.9
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 6.5e-134 481.1 285 83.5
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.1e-133 480.3 301 80.4
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.1e-133 480.3 276 84.1
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.5e-133 479.9 293 78.8
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.5e-133 479.9 305 77.0
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.5e-133 479.9 285 84.2
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.9e-133 479.6 276 83.7
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.2e-133 478.8 293 81.6
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 4.2e-133 478.4 287 80.5
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 9.4e-133 477.2 325 75.7
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 3.6e-132 475.3 276 85.5
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 3.6e-132 475.3 280 80.7
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.7e-132 474.9 277 83.4
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 4.7e-132 474.9 301 80.7
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 6.1e-132 474.6 293 78.2
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.4e-131 473.4 321 76.9
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 5.2e-131 471.5 295 80.0
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.3e-129 466.8 278 81.7
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.8e-128 463.0 276 81.9
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 2.7e-127 459.1 286 78.7
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 8.5e-126 454.1 311 74.0
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 7.2e-125 451.1 310 73.9
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 4.7e-124 448.4 282 80.1
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.8e-123 446.4 262 85.5
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.3e-123 446.0 287 79.1
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 5.7e-122 441.4 282 75.5
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.7e-121 439.9 307 71.0
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.1e-120 437.2 295 76.3
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 7.7e-119 431.0 351 64.1
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.2e-111 407.1 293 72.7
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.6e-111 406.8 273 78.4
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 2.0e-106 389.8 211 91.9
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 5.7e-106 388.3 250 75.6
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 8.3e-105 384.4 237 81.4
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.3e-102 376.3 235 80.0
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 5.0e-102 375.2 235 78.3
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.8e-99 366.7 244 78.7
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 2.2e-97 359.8 288 60.8
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.9e-97 359.4 262 66.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 3.6e-92 342.4 195 86.2
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.1e-91 340.9 208 81.2
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 6.8e-91 338.2 202 78.7
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 6.8e-91 338.2 202 80.2
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.7e-89 332.4 216 77.3
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.1e-88 330.9 196 83.2
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.9e-81 305.4 272 61.4
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 4.9e-81 305.4 263 55.5
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 2.1e-76 290.0 159 88.7
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 1.7e-70 270.4 184 69.0
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.6e-63 247.3 211 61.6
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 8.1e-60 235.0 159 76.7
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 9.0e-51 204.9 119 87.4
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 4.5e-50 202.6 120 81.7
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 7.6e-50 201.8 321 42.1
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 1.0e-49 201.4 167 63.5
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 4.9e-49 199.1 307 42.0
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.1e-47 193.7 116 82.8
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.5e-45 187.6 128 74.2
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 4.3e-45 186.0 223 50.2
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.3e-35 152.5 234 42.7
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.5e-33 145.6 82 84.1
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 1.1e-32 144.8 284 36.6
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 2.8e-28 130.2 289 33.9
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.4e-27 127.9 76 78.9
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 2.4e-27 127.1 63 92.1
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 9.1e-27 125.2 77 76.6
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 5.5e-24 115.9 75 77.3
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.1e-23 114.0 336 28.6
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.3e-20 102.4 102 52.9
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.0e-17 95.1 81 65.4
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.5e-16 91.3 77 64.9
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 9.7e-13 78.6 45 84.4
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 5.0e-09 66.2 129 38.0
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 7.2e-08 62.4 53 64.2
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 6.1e-07 59.3 46 60.9
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 8.0e-07 58.9 59 55.9
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 5.2e-06 56.2 74 44.6


User provided reference genes

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