Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.4e-101 371.3 192 100.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.0e-61 239.6 136 91.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 3.4e-61 238.8 136 92.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.7e-56 221.5 177 72.9
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 5.5e-51 204.9 140 78.6
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-50 202.6 138 79.0
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 9.7e-48 194.1 136 75.0
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.3e-41 172.9 120 75.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.7e-40 167.5 124 71.0
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.4e-38 162.9 137 62.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.1e-38 162.5 115 72.2
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.2e-37 160.6 135 64.4
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.2e-37 160.6 132 66.7
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.5e-37 159.1 124 66.1
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.0e-36 157.5 144 62.5
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.0e-36 157.5 178 52.8
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.3e-36 157.1 135 62.2
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 2.2e-36 156.4 144 59.7
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.9e-36 156.0 146 60.3
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.8e-36 155.6 139 59.7
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.5e-35 152.9 137 61.3
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 9.4e-35 151.0 128 60.2
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.2e-34 150.6 137 61.3
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.6e-34 150.2 147 57.1
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.0e-33 147.5 122 63.9
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.0e-33 147.5 165 50.9
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.2e-32 144.1 140 55.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.5e-32 143.7 135 58.5
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.5e-32 143.7 135 58.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.5e-32 141.4 138 55.1
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 3.7e-31 139.0 135 55.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 8.2e-31 137.9 135 56.3
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 9.1e-30 134.4 143 51.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.5e-29 132.5 130 52.3
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 3.5e-29 132.5 141 52.5
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 5.9e-29 131.7 169 50.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.9e-28 129.4 128 53.1
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.9e-28 129.4 140 52.1
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 5.0e-28 128.6 135 52.6
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 5.0e-28 128.6 116 54.3
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.5e-27 126.3 124 55.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 3.2e-27 125.9 121 52.1
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.2e-27 125.6 80 72.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.5e-27 125.2 112 58.9
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 5.5e-27 125.2 124 53.2
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 7.2e-27 124.8 154 44.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.2e-27 124.8 139 53.2
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 7.2e-27 124.8 128 54.7
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 7.2e-27 124.8 132 49.2
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.1e-26 123.2 136 53.7
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.1e-26 123.2 136 50.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.1e-26 123.2 125 53.6
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.7e-26 122.9 135 51.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.6e-26 122.5 121 50.4
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 4.7e-26 122.1 112 53.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 8.0e-26 121.3 139 48.9
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 8.0e-26 121.3 121 49.6
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 8.0e-26 121.3 121 54.5
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 3.0e-25 119.4 116 55.2
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 3.0e-25 119.4 116 55.2
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.0e-25 119.0 133 49.6
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 5.2e-25 118.6 116 54.3
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 5.2e-25 118.6 145 48.3
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 6.8e-25 118.2 111 56.8
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 6.8e-25 118.2 130 53.8
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 6.8e-25 118.2 112 53.6
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 8.8e-25 117.9 132 50.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.2e-24 117.5 107 57.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.2e-24 117.5 132 53.0
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.5e-24 117.1 132 50.8
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.6e-24 116.3 99 51.5
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.6e-24 116.3 127 52.0
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.4e-24 115.9 117 53.0
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 4.4e-24 115.5 132 50.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 7.5e-24 114.8 92 57.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 7.5e-24 114.8 98 59.2
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 9.8e-24 114.4 139 49.6
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 9.8e-24 114.4 133 48.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 9.8e-24 114.4 130 53.1
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-23 114.0 138 48.6
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.3e-23 114.0 148 45.9
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.7e-23 113.6 120 51.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.8e-23 112.8 181 42.5
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.8e-23 112.1 139 48.9
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 4.8e-23 112.1 139 48.9
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 6.3e-23 111.7 140 45.7
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.4e-22 110.5 124 50.0
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 4.1e-22 109.0 120 46.7
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 5.4e-22 108.6 92 56.5
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 7.0e-22 108.2 109 54.1
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 9.1e-22 107.8 91 58.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.6e-21 107.1 92 59.8
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.6e-21 107.1 137 48.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.6e-21 107.1 109 53.2
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.6e-21 107.1 123 49.6
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.0e-21 106.7 93 62.4
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.7e-21 106.3 173 40.5
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.7e-21 106.3 109 50.5
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 3.5e-21 105.9 109 53.2
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.5e-21 105.5 124 48.4
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 4.5e-21 105.5 109 56.0
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 5.9e-21 105.1 128 46.9
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 5.9e-21 105.1 92 62.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 7.7e-21 104.8 130 48.5
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.0e-20 104.4 142 45.8
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.7e-20 103.6 146 43.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.9e-20 102.8 93 57.0
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.9e-20 102.8 93 57.0
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.9e-20 102.8 98 54.1
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 3.8e-20 102.4 91 56.0
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.8e-20 102.4 98 53.1
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.0e-20 102.1 121 47.1
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.6e-20 101.7 125 44.8
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 6.6e-20 101.7 134 45.5
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.1e-19 100.9 95 52.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-19 100.5 106 50.0
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.5e-19 100.5 126 44.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.9e-19 100.1 91 53.8
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.9e-19 100.1 136 41.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.5e-19 99.8 97 52.6
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.5e-19 99.8 97 52.6
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.3e-19 99.4 119 46.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.3e-19 99.4 93 54.8
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.2e-19 99.0 80 56.2
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.2e-18 97.4 98 53.1
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.6e-18 97.1 125 45.6
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.6e-18 97.1 121 44.6
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.6e-18 97.1 121 44.6
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.1e-18 95.1 120 45.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 8.0e-18 94.7 124 41.1
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.4e-17 94.0 126 42.1
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.4e-17 94.0 116 44.0
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 8.9e-17 91.3 100 55.0
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.8e-15 86.3 100 45.0
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.8e-14 83.6 162 37.0
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.6e-13 80.5 120 37.5
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.6e-13 80.5 66 60.6
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 4.5e-13 79.0 115 41.7
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 7.8e-13 78.2 76 51.3
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 3.8e-12 75.9 103 47.6
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.6e-10 70.5 93 39.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 4.4e-08 62.4 49 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.4e-06 57.4 115 32.2


User provided reference genes

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