Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012521 Solanum tuberosum HOM05D002690 ORTHO05D009463 1.4e-109 399.8 233 100.0
Solyc08g007730.2 Solanum lycopersicum HOM05D002690 ORTHO05D009463 3.4e-79 298.9 310 56.8
Solyc08g007760.3 Solanum lycopersicum HOM05D002690 ORTHO05D009463 6.4e-78 294.7 310 57.1
Sopen08g003670 Solanum pennellii HOM05D002690 ORTHO05D009463 1.9e-77 293.1 310 55.8
Sopen08g003690 Solanum pennellii HOM05D002690 ORTHO05D009463 7.1e-77 291.2 310 56.8
Nitab4.5_0002886g0080 Nicotiana tabacum HOM05D002690 ORTHO05D009463 9.9e-55 217.6 312 44.2
Peaxi162Scf00102g01348 Petunia axillaris HOM05D002690 ORTHO05D009463 3.8e-54 215.7 316 43.0
Nitab4.5_0001200g0030 Nicotiana tabacum HOM05D002690 ORTHO05D009463 8.4e-54 214.5 312 43.9
Solyc08g007750.4 Solanum lycopersicum HOM05D002690 ORTHO05D009463 1.4e-53 213.8 279 48.4
Sopen08g003680 Solanum pennellii HOM05D002690 ORTHO05D009463 1.1e-37 161.0 85 88.2
Dinv39040 Davidia involucrata HOM05D002690 ORTHO05D009463 6.9e-32 141.7 313 33.5
GSVIVG01019895001 Vitis vinifera HOM05D002690 ORTHO05D009463 1.5e-31 140.6 311 33.4
QL12p016222 Quercus lobata HOM05D002690 ORTHO05D009463 2.5e-29 133.3 312 31.7
Ciclev10020457m.g Citrus clementina HOM05D002690 ORTHO05D009463 6.1e-28 128.6 310 32.6
CiPaw.12G101300 Carya illinoinensis HOM05D002690 ORTHO05D009463 2.3e-27 126.7 313 31.9
Cc08_g13680 Coffea canephora HOM05D002690 ORTHO05D009463 3.0e-27 126.3 309 32.7
CAN.G1394.11 Capsicum annuum HOM05D002690 ORTHO05D009463 6.7e-27 125.2 141 52.5
CSS0044732 Camellia sinensis var. sinensis HOM05D002690 ORTHO05D009463 1.3e-25 120.9 310 30.3
Duzib084G0931 Durio zibethinus HOM05D002690 ORTHO05D009463 2.8e-25 119.8 309 32.0
Prupe.5G086300 Prunus persica HOM05D002690 ORTHO05D009463 1.1e-24 117.9 305 30.8
CiPaw.11G143500 Carya illinoinensis HOM05D002690 ORTHO05D009463 3.1e-24 116.3 312 31.4
FAN18G0054 Fragaria x ananassa HOM05D002690 ORTHO05D009463 5.3e-24 115.5 313 29.4
DCAR_000889 Daucus carota HOM05D002690 ORTHO05D009463 6.9e-24 115.2 316 29.1
COL.COLO4_23808 Corchorus olitorius HOM05D002690 ORTHO05D009463 9.1e-24 114.8 311 31.8
SalBow6G1657 Salvia bowleyana HOM05D002690 ORTHO05D009463 1.2e-23 114.4 311 29.3
Migut.A00893 Erythranthe guttata HOM05D002690 ORTHO05D009463 2.0e-23 113.6 311 30.5
Thecc.03G266900 Theobroma cacao HOM05D002690 ORTHO05D009463 5.9e-23 112.1 309 30.4
Gohir.D08G195000 Gossypium hirsutum HOM05D002690 ORTHO05D009463 7.7e-23 111.7 309 30.7
Cpa.g.sc29.42 Carica papaya HOM05D002690 ORTHO05D009463 1.0e-22 111.3 313 31.0
Manes.02G029400 Manihot esculenta HOM05D002690 ORTHO05D009463 1.3e-22 110.9 312 29.5
FvH4_5g01140 Fragaria vesca HOM05D002690 ORTHO05D009463 2.2e-22 110.2 313 28.8
Gorai.004G205800 Gossypium raimondii HOM05D002690 ORTHO05D009463 2.2e-22 110.2 309 30.4
CARHR254320 Cardamine hirsuta HOM05D002690 ORTHO05D009463 3.8e-22 109.4 310 30.6
Atru.chr9.1493 Acer truncatum HOM05D002690 ORTHO05D009463 5.0e-22 109.0 310 28.7
Gohir.A08G176300 Gossypium hirsutum HOM05D002690 ORTHO05D009463 8.5e-22 108.2 309 30.4
CANSAT21G0112 Cannabis sativa HOM05D002690 ORTHO05D009463 1.1e-21 107.8 310 28.4
FAN13G1584 Fragaria x ananassa HOM05D002690 ORTHO05D009463 1.1e-21 107.8 313 28.4
CAN.G1394.12 Capsicum annuum HOM05D002690 ORTHO05D009463 1.4e-21 107.5 59 81.4
Thhalv10029158m.g Eutrema salsugineum HOM05D002690 ORTHO05D009463 1.4e-21 107.5 309 29.4
Sp6g05540 Schrenkiella parvula HOM05D002690 ORTHO05D009463 1.9e-21 107.1 309 29.8
Carub.0006s3107 Capsella rubella HOM05D002690 ORTHO05D009463 2.5e-21 106.7 309 28.8
RcHm_v2.0_Chr7g0199981 Rosa chinensis HOM05D002690 ORTHO05D009463 2.5e-21 106.7 312 28.5
Actinidia02064 Actinidia chinensis HOM05D002690 ORTHO05D009463 7.2e-21 105.1 251 33.5
ATR0661G384 Amborella trichopoda HOM05D002690 ORTHO05D009463 7.2e-21 105.1 291 29.9
CAN.G496.5 Capsicum annuum HOM05D001110 ORTHO05D000942 7.2e-21 105.1 64 71.9
Glyma.01G214100 Glycine max HOM05D002690 ORTHO05D009463 7.2e-21 105.1 318 27.4
AT4G11970 Arabidopsis thaliana HOM05D002690 ORTHO05D009463 1.6e-20 104.0 309 29.1
Potri.001G113500 Populus trichocarpa HOM05D002690 ORTHO05D009463 8.0e-20 101.7 315 29.5
THA.LOC104814099 Tarenaya hassleriana HOM05D002690 ORTHO05D009463 8.0e-20 101.7 314 30.6
Aa31LG9G10500 Aethionema arabicum HOM05D002690 ORTHO05D009463 3.0e-19 99.8 309 28.5
Dinv37714 Davidia involucrata HOM05D002690 ORTHO05D009463 8.8e-19 98.2 144 44.4
Sabra01G0086700 Salix brachista HOM05D002690 ORTHO05D009463 1.5e-18 97.4 318 28.9
Phvul.002G152600 Phaseolus vulgaris HOM05D002690 ORTHO05D009463 2.6e-18 96.7 316 27.5
BcaB05g23778 Brassica carinata HOM05D002690 ORTHO05D009463 3.3e-18 96.3 310 27.7
Haze_08994 Corylus avellana HOM05D002690 ORTHO05D009463 7.4e-18 95.1 244 33.2
Lsat_1_v5_gn_3_4560 Lactuca sativa HOM05D002690 ORTHO05D009463 3.7e-17 92.8 309 25.9
AL6G46740 Arabidopsis lyrata HOM05D002690 ORTHO05D009463 6.3e-17 92.0 309 28.2
PGR031G3842 Punica granatum HOM05D002690 ORTHO05D009463 1.4e-16 90.9 309 27.8
Glyma.11G027800 Glycine max HOM05D002690 ORTHO05D009463 2.4e-16 90.1 278 27.3
Lalb_Chr16g0389701 Lupinus albus HOM05D002690 ORTHO05D009463 2.4e-16 90.1 316 25.6
AUR62010554 Chenopodium quinoa HOM05D002690 ORTHO05D009463 3.1e-16 89.7 310 27.1
A02p25950 Brassica napus HOM05D002690 ORTHO05D009463 2.6e-15 86.7 327 27.5
AUR62017337 Chenopodium quinoa HOM05D002690 ORTHO05D009463 2.6e-15 86.7 305 26.9
Lalb_Chr05g0225491 Lupinus albus HOM05D002690 ORTHO05D009463 3.5e-15 86.3 280 26.4
TAR629G2075 Trochodendron aralioides HOM05D002690 ORTHO05D009463 4.5e-15 85.9 223 31.8
VMungo1215G2259 Vigna mungo HOM05D002690 ORTHO05D009463 4.5e-15 85.9 320 26.9
BcaC03g16321 Brassica carinata HOM05D002690 ORTHO05D009463 5.9e-15 85.5 309 27.8
TWI60G0766 Tripterygium wilfordii HOM05D002690 ORTHO05D009463 5.9e-15 85.5 145 40.0
C02p41350 Brassica napus HOM05D002690 ORTHO05D009463 7.7e-15 85.1 309 27.8
EL10Ac5g12677 Beta vulgaris HOM05D002690 ORTHO05D009463 2.9e-14 83.2 310 26.8
Nn1g01147 Nelumbo nucifera HOM05D002690 ORTHO05D009463 2.9e-14 83.2 273 27.8
Lj2A203T52 Lonicera japonica HOM05D002690 ORTHO05D009463 5.0e-14 82.4 290 28.6
Cfa012062 Carpinus fangiana HOM05D006448 ORTHO05D009463 8.5e-14 81.6 94 51.1
Ca_06672_v3 Cicer arietinum L. HOM05D002690 ORTHO05D009463 8.5e-14 81.6 204 30.9
unitig_52.g17228 Utricularia gibba HOM05D002690 ORTHO05D009463 8.5e-14 81.6 178 35.4
BolC2t10155H Brassica oleracea HOM05D002690 ORTHO05D009463 1.1e-13 81.3 327 26.6
Ah.12g057910 Amaranthus hybridus HOM05D002690 ORTHO05D009463 1.9e-13 80.5 216 29.2
Sc01g0008950 Simmondsia chinensis HOM05D002690 ORTHO05D009463 2.5e-13 80.1 201 30.8
Eucgr.D01949 Eucalyptus grandis HOM05D002690 ORTHO05D009463 3.2e-13 79.7 141 36.9
Lj2g0008902 Lotus japonicus HOM05D002690 ORTHO05D009463 4.2e-13 79.3 141 35.5
arahy.Tifrunner.gnm1.ann1.NNP0DQ Arachis hypogaea HOM05D002690 ORTHO05D009463 1.6e-12 77.4 213 29.1
arahy.Tifrunner.gnm1.ann1.TXC2DL Arachis hypogaea HOM05D002690 ORTHO05D009463 1.6e-12 77.4 213 29.1
SEGI_12754 Sequoiadendron giganteum HOM05D002690 ORTHO05D009463 3.6e-12 76.3 142 34.5
Oeu040251.1 Olea europaea HOM05D002690 ORTHO05D009463 1.0e-11 74.7 80 50.0
HanXRQChr06g0165201 Helianthus annuus HOM05D002690 ORTHO05D009463 2.0e-10 70.5 131 36.6
PSO063G4047 Papaver somniferum HOM05D002690 ORTHO05D009463 7.5e-10 68.6 41 73.2
PSO782G0365 Papaver somniferum HOM05D002690 ORTHO05D009463 7.5e-10 68.6 41 73.2
MSTRG.12035 Avicennia marina HOM05D002690 ORTHO05D009463 1.7e-09 67.4 43 69.8
Oeu048761.1 Olea europaea HOM05D002690 ORTHO05D009463 2.8e-09 66.6 81 42.0
MD06G1069100 Malus domestica HOM05D002690 ORTHO05D009463 4.8e-09 65.9 88 40.9
Pp3c8_11880 Physcomitrium patens HOM05D002690 ORTHO05D009463 8.2e-09 65.1 41 65.9
C02p41360 Brassica napus HOM05D002690 ORTHO05D009463 1.8e-08 63.9 40 72.5
Mapoly0007s0039 Marchantia polymorpha HOM05D002690 ORTHO05D009463 2.4e-08 63.5 43 62.8
RcHm_v2.0_Chr7g0200101 Rosa chinensis HOM05D002690 ORTHO05D009463 4.1e-08 62.8 87 39.1
AagrBONN_evm.TU.Sc2ySwM_344.535 Anthoceros agrestis HOM05D002690 ORTHO05D009463 5.3e-08 62.4 41 68.3
CBR_g9036 Chara braunii HOM05D002690 ORTHO05D009463 4.5e-07 59.3 37 73.0
MSTRG.16286 Avicennia marina HOM05D002690 ORTHO05D005709 7.7e-07 58.5 36 69.4
Peaxi162Scf00155g00068 Petunia axillaris HOM05D002690 ORTHO05D005709 7.7e-07 58.5 40 62.5
SMO364G0768 Selaginella moellendorffii HOM05D002690 ORTHO05D009463 7.7e-07 58.5 36 69.4
Migut.M01886 Erythranthe guttata HOM05D002690 ORTHO05D005709 3.8e-06 56.2 39 61.5
MELO3C002805.2 Cucumis melo HOM05D002690 ORTHO05D005709 5.0e-06 55.8 37 62.2
Migut.H01337 Erythranthe guttata HOM05D002690 ORTHO05D005709 5.0e-06 55.8 39 61.5
Nn3g20245 Nelumbo nucifera HOM05D002690 ORTHO05D005709 5.0e-06 55.8 38 63.2
SalBow7G2713 Salvia bowleyana HOM05D002690 ORTHO05D005709 5.0e-06 55.8 39 61.5
SGA_v2.0_scaffold146G36215 Striga asiatica HOM05D002690 ORTHO05D009463 5.0e-06 55.8 239 25.1
SGA_v2.0_scaffold51G18649 Striga asiatica HOM05D002690 ORTHO05D005709 5.0e-06 55.8 39 61.5
Aa31LG10G6630 Aethionema arabicum HOM05D002690 ORTHO05D005709 6.5e-06 55.5 39 59.0
Os06g0677700 Oryza sativa ssp. japonica HOM05D002690 ORTHO05D005709 6.5e-06 55.5 39 59.0
unitig_0.g927 Utricularia gibba HOM05D002690 ORTHO05D005709 6.5e-06 55.5 36 66.7
unitig_61.g26082 Utricularia gibba HOM05D002690 ORTHO05D005709 6.5e-06 55.5 36 66.7
Atru.chr10.891 Acer truncatum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Actinidia31389 Actinidia chinensis HOM05D001466 ORTHO05D005709 8.5e-06 55.1 36 63.9
Ah.14g086150 Amaranthus hybridus HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
EL10Ac8g19577 Beta vulgaris HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
A07p09930 Brassica napus HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 69.4
C07p15130 Brassica napus HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 69.4
CSS0024768 Camellia sinensis var. sinensis HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
CANSAT35G0839 Cannabis sativa HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
CAN.G660.45 Capsicum annuum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Cfa000832 Carpinus fangiana HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
CiPaw.09G115900 Carya illinoinensis HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
CiPaw.10G086100 Carya illinoinensis HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
AUR62042032 Chenopodium quinoa HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
AUR62042460 Chenopodium quinoa HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
ClCG03G006290 Citrullus lanatus HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
ClCG08G001630 Citrullus lanatus HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Ciclev10014454m.g Citrus clementina HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Haze_05773 Corylus avellana HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
MELO3C022129.2 Cucumis melo HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
CsaV3_5G039520 Cucumis sativus L. HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Eucgr.E02496 Eucalyptus grandis HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
FAN11G1563 Fragaria x ananassa HOM05D002690 ORTHO05D005709 8.5e-06 55.1 38 57.9
FAN16G3174 Fragaria x ananassa HOM05D002690 ORTHO05D005709 8.5e-06 55.1 38 57.9
FAN25G1940 Fragaria x ananassa HOM05D002690 ORTHO05D005709 8.5e-06 55.1 38 57.9
Gohir.A12G045500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Gohir.D12G044500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Gorai.008G046800 Gossypium raimondii HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
MBI18_g10583_MAGBIO Magnolia biondii HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Manes.14G122500 Manihot esculenta HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Nitab4.5_0000100g0020 Nicotiana tabacum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Nitab4.5_0000607g0100 Nicotiana tabacum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
PSO541G0016 Papaver somniferum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
PSO675G8993 Papaver somniferum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
PGR031G1950 Punica granatum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Sed0021012 Sechium edule HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Sed0027591 Sechium edule HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Hund26562 Selenicereus undatus HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Sc24g0001450 Simmondsia chinensis HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Solyc02g021760.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Solyc02g070240.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Sopen02g006300 Solanum pennellii HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Sopen02g019330 Solanum pennellii HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
THA.LOC104798605 Tarenaya hassleriana HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
Thecc.02G012500 Theobroma cacao HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
TAR626G1080 Trochodendron aralioides HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
TAR627G0656 Trochodendron aralioides HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
vmacro03397 Vaccinium macrocarpon HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9
GSVIVG01021617001 Vitis vinifera HOM05D002690 ORTHO05D005709 8.5e-06 55.1 36 63.9


User provided reference genes

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