Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011465 Solanum tuberosum HOM05D001552 ORTHO05D003294 1.3e-28 129.0 65 100.0
PGSC0003DMG400011669 Solanum tuberosum HOM05D001552 ORTHO05D003294 3.8e-28 127.5 65 98.5
Solyc03g058350.4 Solanum lycopersicum HOM05D001552 ORTHO05D003294 1.9e-24 115.2 61 95.1
Sopen03g011870 Solanum pennellii HOM05D001552 ORTHO05D003294 1.9e-24 115.2 61 95.1
Sopen03g015600 Solanum pennellii HOM05D001552 ORTHO05D003294 1.9e-24 115.2 61 95.1
Manes.02G178500 Manihot esculenta HOM05D001552 ORTHO05D003294 1.3e-23 112.5 61 90.2
PGSC0003DMG400041890 Solanum tuberosum HOM05D001552 ORTHO05D003294 1.6e-23 112.1 59 96.6
CAN.G1025.6 Capsicum annuum HOM05D001552 ORTHO05D003294 2.1e-23 111.7 61 90.2
SGA_v2.0_scaffold166G38394 Striga asiatica HOM05D001552 ORTHO05D003294 2.8e-23 111.3 61 88.5
Cpa.g.sc21.188 Carica papaya HOM05D001552 ORTHO05D003294 3.7e-23 110.9 61 88.5
MELO3C023716.2 Cucumis melo HOM05D001552 ORTHO05D003294 4.8e-23 110.5 61 88.5
CsaV3_7G025160 Cucumis sativus L. HOM05D001552 ORTHO05D003294 4.8e-23 110.5 61 88.5
Migut.N02939 Erythranthe guttata HOM05D001552 ORTHO05D003294 4.8e-23 110.5 61 88.5
Sed0008952 Sechium edule HOM05D001552 ORTHO05D003294 4.8e-23 110.5 61 88.5
Atru.chr12.1261 Acer truncatum HOM05D001552 ORTHO05D003294 6.2e-23 110.2 61 88.5
Atru.chr12.1264 Acer truncatum HOM05D001552 ORTHO05D003294 6.2e-23 110.2 61 88.5
Oeu036723.4 Olea europaea HOM05D001552 ORTHO05D003294 8.1e-23 109.8 61 88.5
SGA_v2.0_scaffold11G05904 Striga asiatica HOM05D001552 ORTHO05D003294 8.1e-23 109.8 61 86.9
Dinv25851 Davidia involucrata HOM05D001552 ORTHO05D003294 1.1e-22 109.4 61 86.9
Lj9C478T4 Lonicera japonica HOM05D001552 ORTHO05D003294 1.1e-22 109.4 61 86.9
Sabra12G0027700 Salix brachista HOM05D001552 ORTHO05D003294 1.1e-22 109.4 61 88.5
PGSC0003DMG400004211 Solanum tuberosum HOM05D001387 ORTHO05D001250 1.1e-22 109.4 61 90.2
PGR042G3030 Punica granatum HOM05D001552 ORTHO05D003294 1.4e-22 109.0 61 86.9
PGR122G0003 Punica granatum HOM05D001552 ORTHO05D003294 1.4e-22 109.0 61 86.9
Sed0012093 Sechium edule HOM05D001552 ORTHO05D003294 1.4e-22 109.0 61 86.9
Actinidia10656 Actinidia chinensis HOM05D001552 ORTHO05D003294 1.8e-22 108.6 61 86.9
CSS0002929 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 1.8e-22 108.6 61 86.9
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 1.8e-22 108.6 61 86.9
Lalb_Chr06g0161531 Lupinus albus HOM05D001552 ORTHO05D003294 1.8e-22 108.6 61 86.9
Potri.012G039200 Populus trichocarpa HOM05D001552 ORTHO05D003294 1.8e-22 108.6 61 86.9
Prupe.8G027900 Prunus persica HOM05D001552 ORTHO05D003294 1.8e-22 108.6 61 85.2
SGA_v2.0_scaffold11G05845 Striga asiatica HOM05D001552 ORTHO05D003294 1.8e-22 108.6 61 86.9
TWI32G1172 Tripterygium wilfordii HOM05D001552 ORTHO05D003294 1.8e-22 108.6 61 86.9
RcHm_v2.0_Chr6g0275701 Rosa chinensis HOM05D001552 ORTHO05D003294 2.4e-22 108.2 61 85.2
Ciclev10000034m.g Citrus clementina HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
Cc10_g14600 Coffea canephora HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 86.9
DCAR_014429 Daucus carota HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 86.9
FvH4_2g13940 Fragaria vesca HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
FAN20G2090 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
FAN24G0455 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
FAN27G2666 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
HanXRQChr02g0040771 Helianthus annuus HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
HanXRQChr16g0503421 Helianthus annuus HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
Lsat_1_v5_gn_1_6540 Lactuca sativa HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
Sopen06g019480 Solanum pennellii HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 86.9
PGSC0003DMG400004377 Solanum tuberosum HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 88.5
GSVIVG01034895001 Vitis vinifera HOM05D001552 ORTHO05D003294 3.1e-22 107.8 61 85.2
Glyma.10G225800 Glycine max HOM05D001552 ORTHO05D003294 4.0e-22 107.5 61 85.2
Glyma.20G166200 Glycine max HOM05D001552 ORTHO05D003294 4.0e-22 107.5 61 85.2
Phvul.007G079200 Phaseolus vulgaris HOM05D001552 ORTHO05D003294 4.0e-22 107.5 61 85.2
Sed0008881 Sechium edule HOM05D001552 ORTHO05D003294 4.0e-22 107.5 61 85.2
VMungo0720G2262 Vigna mungo HOM05D001552 ORTHO05D003294 4.0e-22 107.5 61 85.2
Duzib147G0536 Durio zibethinus HOM05D001552 ORTHO05D003294 5.3e-22 107.1 61 85.2
FAN15G1427 Fragaria x ananassa HOM05D001552 ORTHO05D003294 5.3e-22 107.1 61 85.2
MD05G1023200 Malus domestica HOM05D001552 ORTHO05D003294 5.3e-22 107.1 61 83.6
MD10G1024100 Malus domestica HOM05D001552 ORTHO05D003294 5.3e-22 107.1 61 83.6
Rhsim06G0017900 Rhododendron simsii HOM05D001552 ORTHO05D003294 5.3e-22 107.1 61 85.2
PGSC0003DMG400012783 Solanum tuberosum HOM05D001552 ORTHO05D003294 5.3e-22 107.1 61 88.5
PGSC0003DMG400030793 Solanum tuberosum HOM05D001552 ORTHO05D003294 5.3e-22 107.1 61 86.9
Ah.04g157390 Amaranthus hybridus HOM05D001552 ORTHO05D003294 6.9e-22 106.7 61 85.2
Duzib248G1523 Durio zibethinus HOM05D001552 ORTHO05D003294 6.9e-22 106.7 61 85.2
Thecc.01G142700 Theobroma cacao HOM05D001552 ORTHO05D003294 6.9e-22 106.7 61 85.2
Thecc.01G143000 Theobroma cacao HOM05D001552 ORTHO05D003294 6.9e-22 106.7 61 85.2
AL2G36950 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 9.0e-22 106.3 61 83.6
CDE04G0364 Ceratophyllum demersum HOM05D001552 ORTHO05D003294 9.0e-22 106.3 61 83.6
Psat6g193320 Pisum sativum HOM05D001552 ORTHO05D003294 9.0e-22 106.3 58 87.9
Sp5g31970 Schrenkiella parvula HOM05D001552 ORTHO05D003294 9.0e-22 106.3 61 83.6
TPR.G30006 Trifolium pratense HOM05D001552 ORTHO05D003294 9.0e-22 106.3 58 87.9
Aqoxy5G01312 Aquilegia oxysepala HOM05D001552 ORTHO05D003294 1.2e-21 105.9 61 83.6
Eucgr.F02713 Eucalyptus grandis HOM05D001552 ORTHO05D003294 1.2e-21 105.9 58 89.7
Gohir.A04G138500 Gossypium hirsutum HOM05D001552 ORTHO05D003294 1.2e-21 105.9 61 83.6
Gorai.012G174700 Gossypium raimondii HOM05D001552 ORTHO05D003294 1.2e-21 105.9 61 83.6
Sc15g0007410 Simmondsia chinensis HOM05D001552 ORTHO05D003294 1.2e-21 105.9 61 85.2
Sc15g0007440 Simmondsia chinensis HOM05D001552 ORTHO05D003294 1.2e-21 105.9 61 85.2
PGSC0003DMG400027861 Solanum tuberosum HOM05D001552 ORTHO05D003294 1.2e-21 105.9 61 85.2
THA.LOC104813715 Tarenaya hassleriana HOM05D001552 ORTHO05D003294 1.2e-21 105.9 61 83.6
AT1G76810 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 1.5e-21 105.5 61 83.6
SMO356G0283 Selaginella moellendorffii HOM05D001552 ORTHO05D003294 1.5e-21 105.5 61 82.0
Hund00531 Selenicereus undatus HOM05D001552 ORTHO05D003294 1.5e-21 105.5 61 85.2
Solyc06g054400.3 Solanum lycopersicum HOM05D001552 ORTHO05D003294 1.5e-21 105.5 61 85.2
Aa31LG4G6880 Aethionema arabicum HOM05D001552 ORTHO05D003294 2.0e-21 105.1 58 86.2
Carub.0002s2372 Capsella rubella HOM05D001552 ORTHO05D003294 2.0e-21 105.1 61 82.0
Medtr1g098970 Medicago truncatula HOM05D001552 ORTHO05D003294 2.0e-21 105.1 58 86.2
Nn1g04789 Nelumbo nucifera HOM05D001552 ORTHO05D003294 2.0e-21 105.1 61 82.0
Nn5g30352 Nelumbo nucifera HOM05D001552 ORTHO05D003294 2.0e-21 105.1 61 82.0
arahy.Tifrunner.gnm1.ann1.41AL06 Arachis hypogaea HOM05D001552 ORTHO05D003294 2.6e-21 104.8 61 82.0
arahy.Tifrunner.gnm1.ann1.I67LVW Arachis hypogaea HOM05D001552 ORTHO05D003294 2.6e-21 104.8 61 82.0
Ca_19934_v3 Cicer arietinum L. HOM05D001552 ORTHO05D003294 2.6e-21 104.8 58 86.2
Medtr1g099000 Medicago truncatula HOM05D001552 ORTHO05D003294 2.6e-21 104.8 58 86.2
CARHR070350 Cardamine hirsuta HOM05D001552 ORTHO05D003294 3.4e-21 104.4 61 80.3
ECA247G0581 Erigeron canadensis HOM05D001552 ORTHO05D003294 3.4e-21 104.4 61 83.6
Hund21082 Selenicereus undatus HOM05D001552 ORTHO05D003294 3.4e-21 104.4 58 86.2
EL10Ac7g16024 Beta vulgaris HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
BcaB05g25013 Brassica carinata HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
BcaC03g15705 Brassica carinata HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
A02p20910 Brassica napus HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
C02p32730 Brassica napus HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
BolC2t09426H Brassica oleracea HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
BraA02t07123Z Brassica rapa HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
CSS0040061 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 82.0
CSS0046977 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 82.0
TAR381G0343 Trochodendron aralioides HOM05D001552 ORTHO05D003294 4.5e-21 104.0 61 80.3
AL2G36870 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 7.6e-21 103.2 61 82.0
BcaB03g12829 Brassica carinata HOM05D001552 ORTHO05D003294 7.6e-21 103.2 61 78.7
PSO541G0812 Papaver somniferum HOM05D001552 ORTHO05D003294 7.6e-21 103.2 61 80.3
PSO675G0197 Papaver somniferum HOM05D001552 ORTHO05D003294 7.6e-21 103.2 61 80.3
Rhsim02G0210400 Rhododendron simsii HOM05D001552 ORTHO05D003294 7.6e-21 103.2 58 84.5
Sopen04g036040 Solanum pennellii HOM05D001552 ORTHO05D003294 7.6e-21 103.2 61 82.0
BcaC07g39081 Brassica carinata HOM05D001552 ORTHO05D003294 1.0e-20 102.8 61 77.0
C08p20660 Brassica napus HOM05D001552 ORTHO05D003294 1.0e-20 102.8 61 77.0
BolC8t49698H Brassica oleracea HOM05D001552 ORTHO05D003294 1.0e-20 102.8 61 77.0
Thhalv10018018m.g Eutrema salsugineum HOM05D001552 ORTHO05D003294 1.0e-20 102.8 61 78.7
Mapoly0112s0026 Marchantia polymorpha HOM05D001552 ORTHO05D003294 1.7e-20 102.1 62 82.3
Hund21083 Selenicereus undatus HOM05D001552 ORTHO05D003294 2.2e-20 101.7 61 82.0
AUR62005931 Chenopodium quinoa HOM05D001552 ORTHO05D003294 2.9e-20 101.3 61 78.7
AUR62005934 Chenopodium quinoa HOM05D001552 ORTHO05D003294 2.9e-20 101.3 61 78.7
HanXRQChr10g0306561 Helianthus annuus HOM05D001552 ORTHO05D003294 2.9e-20 101.3 61 80.3
AagrBONN_evm.TU.Sc2ySwM_228.5643 Anthoceros agrestis HOM05D001552 ORTHO05D003294 3.8e-20 100.9 62 82.3
A08p29040 Brassica napus HOM05D001552 ORTHO05D003294 4.9e-20 100.5 61 75.4
BraA08t34839Z Brassica rapa HOM05D001552 ORTHO05D003294 4.9e-20 100.5 61 75.4
Lj5g0023968 Lotus japonicus HOM05D001552 ORTHO05D003294 4.9e-20 100.5 58 82.8
Prupe.2G099300 Prunus persica HOM05D001552 ORTHO05D003294 6.5e-20 100.1 61 82.0
ATR0749G103 Amborella trichopoda HOM05D001552 ORTHO05D003294 8.4e-20 99.8 62 82.3
Os05g0592600 Oryza sativa ssp. japonica HOM05D001552 ORTHO05D003294 8.4e-20 99.8 60 78.3
TAR625G0242 Trochodendron aralioides HOM05D001552 ORTHO05D003294 8.4e-20 99.8 61 77.0
Zm00001eb345280 Zea mays HOM05D001552 ORTHO05D003294 8.4e-20 99.8 60 78.3
Atru.chr3.1471 Acer truncatum HOM05D001552 ORTHO05D003294 1.1e-19 99.4 61 82.0
Thhalv10006634m.g Eutrema salsugineum HOM05D001552 ORTHO05D003294 1.4e-19 99.0 61 75.4
SEGI_17464 Sequoiadendron giganteum HOM05D001552 ORTHO05D003294 1.9e-19 98.6 59 83.1
CiPaw.16G013700 Carya illinoinensis HOM05D001552 ORTHO05D003294 2.5e-19 98.2 61 77.0
CARHR021610 Cardamine hirsuta HOM05D001552 ORTHO05D003294 3.2e-19 97.8 61 75.4
CBR_g36859 Chara braunii HOM05D001552 ORTHO05D003294 3.2e-19 97.8 62 77.4
Carub.0002s2359 Capsella rubella HOM05D001552 ORTHO05D003294 4.2e-19 97.4 61 73.8
CiPaw.15G017000 Carya illinoinensis HOM05D001552 ORTHO05D003294 4.2e-19 97.4 61 75.4
Pp3c4_28500 Physcomitrium patens HOM05D001552 ORTHO05D003294 4.2e-19 97.4 62 77.4
Migut.B00231 Erythranthe guttata HOM05D001552 ORTHO05D003294 7.1e-19 96.7 61 78.7
TWI34G0022 Tripterygium wilfordii HOM05D001552 ORTHO05D003294 7.1e-19 96.7 63 77.8
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 4.6e-18 94.0 61 70.5
AT1G21160 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 1.0e-17 92.8 61 72.1
Ciclev10000191m.g Citrus clementina HOM05D001552 ORTHO05D003294 1.8e-17 92.0 58 74.1
PGSC0003DMG400005489 Solanum tuberosum HOM05D001552 ORTHO05D003294 1.8e-17 92.0 50 92.0
HPP92_007723 Vanilla planifolia HOM05D001552 ORTHO05D003294 1.8e-17 92.0 55 80.0
AT2G27700 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 2.3e-17 91.7 61 72.1
AL1G34220 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 5.1e-17 90.5 58 70.7
CAN.G371.7 Capsicum annuum HOM05D001552 ORTHO05D003294 5.1e-17 90.5 61 70.5
Atru.chr13.2172 Acer truncatum HOM05D001552 ORTHO05D003294 8.7e-17 89.7 49 91.8
COL.COLO4_14636 Corchorus olitorius HOM05D001552 ORTHO05D003294 8.7e-17 89.7 60 71.7
PSO541G1760 Papaver somniferum HOM05D001552 ORTHO05D003294 2.5e-16 88.2 61 70.5
PSO541G3527 Papaver somniferum HOM05D001552 ORTHO05D003294 2.5e-16 88.2 61 70.5
Cfa026925 Carpinus fangiana HOM05D001552 ORTHO05D003294 3.3e-16 87.8 58 70.7
Potri.019G103600 Populus trichocarpa HOM05D001552 ORTHO05D003294 7.4e-16 86.7 57 75.4
Carub.0001s2060 Capsella rubella HOM05D001552 ORTHO05D003294 2.1e-15 85.1 60 68.3
DCAR_013502 Daucus carota HOM05D001552 ORTHO05D003294 2.1e-15 85.1 60 73.3
Gohir.D04G181400 Gossypium hirsutum HOM05D001552 ORTHO05D003294 2.1e-15 85.1 52 78.8
Carub.0002s2361 Capsella rubella HOM05D001552 ORTHO05D003294 3.7e-15 84.3 61 68.9
Cre02.g078100 Chlamydomonas reinhardtii HOM05D001552 ORTHO05D003294 4.8e-15 84.0 62 67.7
BolC6t40125H Brassica oleracea HOM05D001552 ORTHO05D013172 1.1e-14 82.8 49 81.6
MCO01G059 Micromonas commoda HOM05D001552 ORTHO05D003294 3.1e-14 81.3 62 69.4
Cc01_g07350 Coffea canephora HOM05D001552 ORTHO05D003294 2.6e-13 78.2 58 62.1
Medtr7g100900 Medicago truncatula HOM05D001552 ORTHO05D003294 5.9e-13 77.0 58 63.8
Rhsim02G0211100 Rhododendron simsii HOM05D001552 ORTHO05D003294 7.6e-13 76.6 52 75.0
RcHm_v2.0_Chr4g0445721 Rosa chinensis HOM05D001552 ORTHO05D003294 1.3e-12 75.9 59 67.8
PRCOL_00000626 Prasinoderma coloniale HOM05D001552 ORTHO05D003294 1.4e-11 72.4 62 56.5
ECA248G2086 Erigeron canadensis HOM05D001552 ORTHO05D003294 3.2e-11 71.2 61 54.1
FAN03G2186 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.5e-10 67.8 43 79.1
AT1G76720 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 1.0e-09 66.2 41 75.6
FvH4_4g36100 Fragaria vesca HOM05D001552 ORTHO05D003294 3.9e-09 64.3 59 57.6
ECA247G2580 Erigeron canadensis HOM05D001552 ORTHO05D003294 6.7e-09 63.5 58 55.2
Medtr4g011840 Medicago truncatula HOM05D001552 ORTHO05D003294 2.5e-08 61.6 49 59.2
FAN07G2430 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.3e-08 61.2 59 55.9
FAN12G1085 Fragaria x ananassa HOM05D001552 ORTHO05D003294 3.3e-08 61.2 59 55.9
FAN17G0107 Fragaria x ananassa HOM05D001552 ORTHO05D003294 9.7e-08 59.7 59 54.2
Thhalv10022147m.g Eutrema salsugineum HOM05D001552 ORTHO05D013172 8.2e-07 56.6 58 48.3
Pp3c26_12510 Physcomitrium patens HOM05D001552 ORTHO05D003294 4.1e-06 54.3 59 57.6


User provided reference genes

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