Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.4e-131 470.7 230 100.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 3.1e-93 345.5 191 86.4
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.9e-91 339.0 191 84.3
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 3.2e-90 335.5 191 83.8
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.4e-85 319.3 191 82.2
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.2e-82 308.9 192 75.0
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 3.5e-76 288.9 191 72.3
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 8.0e-73 277.7 153 86.9
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 1.2e-55 220.7 195 52.8
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 4.1e-53 212.2 196 53.1
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.0e-52 209.9 200 52.0
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 6.0e-52 208.4 190 50.5
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 4.3e-50 202.2 200 50.0
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 3.6e-49 199.1 190 51.6
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.8e-48 196.8 196 49.5
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 7.5e-47 191.4 189 46.6
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 7.5e-47 191.4 193 49.2
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 9.8e-47 191.0 199 47.2
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 4.9e-46 188.7 197 49.2
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 4.9e-46 188.7 197 49.2
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.4e-45 187.2 221 44.3
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 2.4e-45 186.4 195 46.7
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 2.4e-45 186.4 196 49.5
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 7.0e-45 184.9 195 45.6
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 9.2e-45 184.5 189 45.5
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 4.6e-44 182.2 196 43.4
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.3e-43 180.6 195 45.1
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.3e-43 180.6 195 45.1
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 6.6e-43 178.3 194 46.9
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 8.6e-43 177.9 191 47.6
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.1e-42 177.6 193 48.2
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.5e-42 177.2 195 46.7
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.5e-42 177.2 193 48.2
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.9e-42 176.8 193 49.2
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.5e-42 176.4 192 47.9
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.5e-42 176.4 194 48.5
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 3.3e-42 176.0 193 48.2
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.3e-42 176.0 193 48.2
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 4.3e-42 175.6 234 40.6
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 4.3e-42 175.6 234 40.6
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.3e-42 174.9 193 47.7
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 1.2e-41 174.1 194 44.8
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.6e-41 173.7 193 48.2
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.1e-41 173.3 193 44.0
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 2.8e-41 172.9 195 45.6
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 3.6e-41 172.6 193 43.5
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.1e-40 171.0 200 45.5
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 3.1e-40 169.5 195 45.1
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 3.1e-40 169.5 202 43.6
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 5.2e-40 168.7 197 45.2
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 6.8e-40 168.3 199 47.7
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 6.8e-40 168.3 191 45.5
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.5e-39 167.2 203 47.3
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.5e-39 167.2 199 43.2
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 2.6e-39 166.4 206 43.7
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 3.4e-39 166.0 197 45.2
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 3.4e-39 166.0 195 42.1
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 4.4e-39 165.6 190 43.2
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 4.4e-39 165.6 195 44.6
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 5.8e-39 165.2 199 44.2
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 1.3e-38 164.1 196 40.3
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 2.9e-38 162.9 197 42.1
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 4.9e-38 162.2 196 43.9
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 6.4e-38 161.8 197 43.7
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 8.3e-38 161.4 194 40.7
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 8.3e-38 161.4 205 42.4
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.1e-37 161.0 197 43.7
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.4e-37 160.6 191 42.9
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.4e-37 160.6 195 43.6
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.4e-37 160.6 194 40.2
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.9e-37 160.2 189 41.8
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 2.4e-37 159.8 205 43.9
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 9.2e-37 157.9 194 39.7
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.6e-36 157.1 194 39.2
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.1e-36 156.8 199 41.7
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.7e-36 156.4 193 38.9
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 3.5e-36 156.0 248 38.3
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 1.0e-35 154.5 190 43.7
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.3e-35 154.1 204 40.7
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.7e-35 153.7 199 42.2
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 2.3e-35 153.3 247 38.5
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 2.3e-35 153.3 198 44.4
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 5.1e-35 152.1 191 42.9
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 6.6e-35 151.8 198 43.9
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 8.6e-35 151.4 199 39.7
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 2.5e-34 149.8 197 37.6
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 3.3e-34 149.4 197 40.6
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 9.5e-34 147.9 199 42.7
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 9.5e-34 147.9 242 37.2
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.2e-33 147.5 189 42.3
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.1e-33 146.7 196 40.8
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 4.7e-33 145.6 189 39.2
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 4.7e-33 145.6 195 42.1
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.6e-31 139.8 199 39.2
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 9.9e-31 137.9 192 36.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 3.8e-30 136.0 191 36.6
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.1e-29 134.4 192 39.6
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.4e-29 134.0 263 30.8
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 4.2e-29 132.5 238 34.5
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 5.4e-29 132.1 236 35.6
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 7.1e-29 131.7 196 37.8
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 9.2e-29 131.3 231 33.3
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 1.6e-28 130.6 249 32.9
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 2.1e-28 130.2 194 35.6
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 1.7e-27 127.1 265 30.9
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 1.7e-27 127.1 287 30.3
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 3.0e-27 126.3 194 34.5
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 8.7e-27 124.8 196 35.2
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 1.9e-26 123.6 194 33.5
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.5e-26 123.2 196 36.2
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.5e-26 123.2 196 36.2
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.6e-25 120.6 220 35.0
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 2.8e-25 119.8 194 33.5
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 4.0e-24 115.9 201 36.3
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 5.3e-24 115.5 279 28.7
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 6.9e-24 115.2 194 34.5
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 4.4e-23 112.5 175 35.4
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 7.6e-23 111.7 224 33.0
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 3.8e-22 109.4 201 36.3
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 6.4e-22 108.6 99 46.5
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.4e-21 107.5 82 54.9
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.1e-19 99.0 91 46.2
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 6.0e-12 75.5 42 69.0
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.9e-10 70.5 37 73.0
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 3.7e-09 66.2 77 42.9
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 3.1e-08 63.2 35 71.4
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.9e-08 62.0 37 67.6


User provided reference genes

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