Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 8.7e-243 843.2 419 100.0
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.5e-234 815.1 419 96.7
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 4.3e-234 814.3 419 96.7
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 1.9e-226 788.9 416 94.5
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 6.9e-216 753.8 416 88.7
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 7.4e-210 733.8 417 88.5
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 7.2e-189 664.1 415 77.8
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 9.4e-189 663.7 417 78.2
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 1.2e-188 663.3 416 75.2
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 1.0e-187 660.2 413 79.7
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 2.6e-186 655.6 416 76.0
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 3.4e-186 655.2 405 79.3
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 7.5e-186 654.1 401 78.8
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 7.5e-186 654.1 401 78.3
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 1.3e-185 653.3 408 75.5
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 1.3e-185 653.3 416 74.3
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 1.7e-185 652.9 414 75.8
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 2.8e-185 652.1 417 74.8
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 3.7e-185 651.7 417 75.8
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 8.3e-185 650.6 399 78.2
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 1.1e-184 650.2 411 78.1
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 1.1e-184 650.2 409 77.8
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 3.1e-184 648.7 417 76.0
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 4.1e-184 648.3 408 76.7
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 5.4e-184 647.9 413 75.8
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 5.4e-184 647.9 412 77.2
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 7.0e-184 647.5 415 76.6
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 7.0e-184 647.5 408 75.0
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 1.6e-183 646.4 412 76.9
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 1.6e-183 646.4 410 77.1
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 2.0e-183 646.0 412 76.7
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 2.0e-183 646.0 412 76.0
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 2.0e-183 646.0 419 74.7
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 3.5e-183 645.2 401 77.3
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 7.7e-183 644.0 402 77.9
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 1.7e-182 642.9 402 77.1
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 2.2e-182 642.5 415 75.2
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.9e-182 642.1 426 73.0
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 6.5e-182 641.0 426 72.5
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 1.5e-181 639.8 414 75.6
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 1.9e-181 639.4 410 74.9
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 2.5e-181 639.0 398 77.4
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 3.2e-181 638.6 415 73.5
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 3.2e-181 638.6 422 73.0
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 4.2e-181 638.3 414 75.6
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 9.5e-181 637.1 416 75.0
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 1.2e-180 636.7 414 75.4
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 6.1e-180 634.4 406 76.8
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 6.1e-180 634.4 403 76.4
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 4.0e-179 631.7 416 78.1
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 4.0e-179 631.7 439 71.1
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 8.8e-179 630.6 452 68.4
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 7.5e-178 627.5 417 73.9
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 9.8e-178 627.1 405 75.1
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 9.8e-178 627.1 405 75.1
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 1.1e-176 623.6 414 74.6
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 1.4e-176 623.2 410 75.1
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 7.0e-176 620.9 410 74.9
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 1.6e-175 619.8 418 72.2
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 1.7e-174 616.3 406 73.6
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 1.5e-173 613.2 417 73.9
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 1.5e-173 613.2 417 73.9
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 2.8e-172 609.0 398 74.6
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 8.0e-172 607.4 407 72.5
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 1.0e-171 607.1 407 73.0
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 2.3e-171 605.9 422 72.0
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 1.5e-170 603.2 412 70.9
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 5.7e-170 601.3 413 70.9
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 6.4e-169 597.8 401 71.8
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 6.4e-169 597.8 406 72.2
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 8.3e-169 597.4 406 71.7
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 1.1e-168 597.0 398 72.4
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 1.8e-168 596.3 409 71.1
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 1.2e-167 593.6 398 72.1
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 2.7e-167 592.4 406 71.7
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 7.8e-167 590.9 409 70.7
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 7.3e-165 584.3 491 62.3
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 1.6e-164 583.2 437 68.0
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 6.2e-164 581.3 406 69.2
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 6.2e-164 581.3 311 92.9
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 8.9e-163 577.4 406 68.5
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 8.9e-163 577.4 400 72.5
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 1.7e-161 573.2 374 74.1
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 4.9e-161 571.6 407 68.6
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 1.9e-160 569.7 414 67.4
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 1.2e-159 567.0 406 67.7
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.7e-159 565.8 417 67.6
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 2.7e-159 565.8 426 66.4
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 7.8e-159 564.3 418 66.7
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 7.8e-159 564.3 469 62.3
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 1.0e-158 563.9 384 72.1
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 2.3e-158 562.8 434 67.1
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.3e-158 562.8 398 68.8
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.5e-157 559.3 398 68.8
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 1.2e-156 557.0 399 66.7
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 2.6e-154 549.3 375 70.4
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 7.5e-154 547.7 417 65.0
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 6.2e-148 528.1 394 63.7
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 8.4e-145 517.7 327 75.5
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 1.7e-137 493.4 406 62.3
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.6e-135 486.9 420 60.7
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 2.6e-122 443.0 400 53.5
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.1e-120 437.6 418 53.6
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.5e-117 427.2 268 77.6
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 3.2e-96 356.3 426 48.6
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.5e-90 337.4 338 57.1
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 5.9e-90 335.5 243 66.3
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 2.9e-81 306.6 416 44.2
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 4.2e-80 302.8 238 62.6
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.2e-66 258.1 172 72.1
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 2.0e-61 240.7 249 53.4
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 4.5e-58 229.6 151 73.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 1.7e-44 184.5 216 43.5
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.4e-43 180.6 98 92.9
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.2e-34 151.8 132 55.3
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.2e-31 141.7 104 66.3
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.8e-30 137.9 94 71.3
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.6e-23 113.6 58 98.3
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 4.4e-21 106.7 413 23.5
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 5.8e-21 106.3 82 64.6
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.1e-10 71.2 37 91.9
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 6.0e-10 69.7 116 38.8
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.8e-06 58.2 325 20.9
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.9e-06 56.2 117 30.8


User provided reference genes

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