Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.9e-304 1047.7 518 100.0
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 2.7e-302 1041.2 518 99.0
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 2.7e-302 1041.2 518 99.0
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 6.9e-290 1000.0 518 94.2
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 5.6e-284 980.3 554 88.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 4.0e-274 947.6 502 90.4
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.2e-273 946.0 520 88.5
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.2e-273 946.0 519 87.7
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 7.6e-273 943.3 517 88.4
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.2e-272 941.8 520 87.7
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.8e-272 941.0 520 87.3
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.1e-271 939.5 501 89.8
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.2e-270 936.0 519 87.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.6e-270 935.6 519 87.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.1e-270 935.3 517 86.7
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 2.1e-270 935.3 520 86.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 3.5e-270 934.5 532 84.6
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 3.0e-269 931.4 517 87.0
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 3.0e-269 931.4 521 86.9
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.0e-269 931.4 516 87.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 6.7e-269 930.2 530 84.7
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 8.7e-269 929.9 523 85.9
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.5e-268 929.1 505 88.5
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.5e-268 928.3 523 86.4
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.5e-268 928.3 525 85.9
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.3e-268 927.9 526 85.7
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.3e-268 927.5 516 87.2
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 4.3e-268 927.5 516 86.8
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 7.4e-268 926.8 530 84.5
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.6e-268 926.4 524 85.9
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.6e-268 926.4 524 85.9
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.8e-267 924.9 523 86.2
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.7e-267 924.5 516 86.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 4.8e-267 924.1 528 85.2
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 4.8e-267 924.1 521 86.4
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.8e-267 924.1 523 86.0
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 8.2e-267 923.3 525 85.1
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.4e-266 922.5 523 86.0
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.4e-266 922.5 514 86.8
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.8e-266 922.2 519 86.1
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.4e-266 921.8 518 84.9
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 4.1e-266 921.0 521 85.8
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.1e-266 921.0 523 86.0
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.5e-265 919.1 540 83.3
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.0e-265 918.7 523 85.7
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 2.0e-265 918.7 517 85.9
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.4e-265 917.9 520 85.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.4e-265 917.9 528 83.9
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 4.5e-265 917.5 517 85.7
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 5.9e-265 917.1 508 86.8
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.0e-264 916.4 516 85.3
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.3e-264 916.0 525 84.6
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.8e-264 914.4 518 86.1
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.4e-263 912.5 519 85.0
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.9e-263 912.1 504 87.3
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 9.3e-263 909.8 516 85.3
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.7e-262 908.3 522 83.5
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 3.5e-262 907.9 501 87.0
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.5e-262 907.9 523 84.3
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 3.5e-262 907.9 517 84.5
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 3.5e-262 907.9 507 85.4
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 7.9e-262 906.7 530 82.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.0e-261 906.4 501 86.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.0e-261 906.4 501 86.8
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.0e-261 906.4 523 84.5
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.0e-261 906.4 524 83.0
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.3e-261 905.2 518 84.0
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.9e-261 904.4 524 83.2
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.9e-261 904.4 520 84.4
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 5.1e-261 904.0 504 85.9
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 5.1e-261 904.0 529 83.0
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 8.7e-261 903.3 529 82.8
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.1e-260 902.9 513 85.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.9e-260 902.1 515 84.7
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.9e-260 902.1 515 84.7
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.9e-260 902.1 514 84.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.3e-260 901.4 515 84.7
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.3e-260 901.4 515 84.7
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 5.7e-260 900.6 498 86.3
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 7.4e-260 900.2 522 83.9
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 7.4e-260 900.2 514 84.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 9.7e-260 899.8 515 84.5
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.6e-259 899.0 501 85.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.8e-259 898.3 513 84.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 4.8e-259 897.5 501 85.4
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 6.3e-259 897.1 522 82.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.3e-259 897.1 523 83.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 8.2e-259 896.7 525 84.4
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.4e-258 896.0 491 88.0
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.4e-258 896.0 500 85.4
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.3e-258 894.0 546 79.9
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 9.0e-258 893.3 522 83.0
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.2e-257 892.9 529 82.8
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.5e-257 892.5 510 83.1
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 7.7e-257 890.2 522 81.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.3e-256 889.4 504 84.5
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 8.5e-256 886.7 516 82.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.2e-255 884.8 522 81.2
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.1e-254 880.6 519 82.1
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.1e-254 880.6 519 82.1
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.8e-253 879.0 520 82.7
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.3e-251 872.8 513 80.7
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.2e-251 872.1 511 81.6
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.2e-246 856.3 506 79.1
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.6e-246 855.9 528 77.3
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 3.9e-245 851.3 521 80.4
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.4e-242 842.0 518 78.8
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.2e-239 831.6 528 75.8
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.0e-232 810.1 564 71.6
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.3e-229 798.9 521 72.9
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.6e-228 795.4 523 73.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 5.4e-226 787.7 499 74.3
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.5e-223 779.6 506 71.7
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.2e-223 778.1 514 70.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.7e-222 775.4 473 81.2
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.3e-221 772.3 514 70.4
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.2e-219 765.8 514 69.5
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.7e-217 758.8 495 70.9
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.8e-216 755.0 505 72.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.4e-210 735.7 526 72.2
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.7e-208 729.6 516 71.9
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.5e-207 725.7 412 84.2
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 9.5e-207 723.8 520 71.7
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 5.2e-205 718.0 491 68.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.9e-199 699.5 522 69.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.8e-190 669.1 379 86.0
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.3e-189 666.0 535 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.9e-186 656.4 504 64.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 7.1e-178 627.9 419 76.1
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 3.5e-177 625.5 346 88.7
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.8e-173 613.2 344 86.6
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 6.4e-163 578.2 522 58.4
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 5.5e-162 575.1 287 95.5
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.5e-151 540.4 355 75.8
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.5e-151 540.4 290 87.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 7.4e-151 538.1 491 52.1
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 2.7e-137 493.0 510 50.6
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 3.6e-137 492.7 275 88.7
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.5e-135 487.3 355 70.7
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 6.1e-129 465.3 502 49.6
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 5.2e-120 435.6 285 77.2
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.9e-98 364.0 191 88.5
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.2e-78 297.4 409 38.9
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 7.6e-63 245.7 325 44.9
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.8e-62 243.4 362 42.3
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 4.5e-47 193.4 120 75.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 8.4e-38 162.5 93 84.9
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.8e-33 147.5 79 89.9
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.7e-30 138.3 93 67.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.4e-24 118.6 68 79.4
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 8.8e-19 99.4 78 65.4
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 3.8e-14 84.0 72 56.9
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 8.0e-12 76.3 125 40.8
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 5.7e-10 70.1 48 60.4
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 7.7e-07 59.7 35 71.4


User provided reference genes

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