Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 9.7e-183 643.3 309 100.0
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 9.5e-138 493.8 421 62.9
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 3.0e-131 472.2 421 60.6
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 6.6e-131 471.1 421 60.6
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 1.2e-127 460.3 421 59.4
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.5e-124 448.7 421 58.2
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.7e-118 429.9 421 56.3
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.9e-118 429.1 421 56.1
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 2.1e-84 316.6 237 65.4
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.4e-83 313.9 237 64.1
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.4e-83 313.9 237 65.0
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.8e-83 313.5 230 66.5
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.8e-83 313.5 236 65.3
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 5.1e-83 312.0 235 63.8
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 5.1e-83 312.0 239 63.2
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 6.7e-83 311.6 237 63.7
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 6.7e-83 311.6 237 64.6
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 8.8e-83 311.2 237 65.4
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 8.8e-83 311.2 237 65.4
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 3.3e-82 309.3 236 64.4
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 3.3e-82 309.3 236 62.7
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 4.3e-82 308.9 239 64.4
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 7.4e-82 308.1 240 62.5
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 7.4e-82 308.1 239 63.2
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.7e-81 307.0 237 62.0
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.2e-81 306.6 239 62.3
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 3.7e-81 305.8 273 56.8
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 3.7e-81 305.8 236 62.3
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 3.7e-81 305.8 237 62.9
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 3.7e-81 305.8 237 63.7
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 3.7e-81 305.8 229 64.6
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 4.8e-81 305.4 239 62.8
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 4.8e-81 305.4 239 61.9
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 6.3e-81 305.1 237 63.3
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 8.2e-81 304.7 221 66.1
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 8.2e-81 304.7 239 64.0
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.1e-80 304.3 239 62.3
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.1e-80 304.3 239 62.3
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.4e-80 303.9 237 60.3
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.8e-80 303.5 237 62.4
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 2.4e-80 303.1 238 62.6
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.1e-80 302.8 235 63.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 4.1e-80 302.4 239 61.1
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.9e-80 301.6 240 61.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 9.1e-80 301.2 228 64.0
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 9.1e-80 301.2 231 61.9
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 9.1e-80 301.2 239 61.5
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 9.1e-80 301.2 233 61.8
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 9.1e-80 301.2 233 61.8
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 2.0e-79 300.1 231 61.5
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.0e-79 300.1 235 62.6
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 2.0e-79 300.1 239 61.1
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.6e-79 299.7 231 61.5
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 2.6e-79 299.7 237 61.2
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 2.6e-79 299.7 239 61.1
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 3.4e-79 299.3 231 61.0
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 4.5e-79 298.9 239 61.5
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 5.9e-79 298.5 231 62.8
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 5.9e-79 298.5 239 61.5
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 7.7e-79 298.1 239 61.1
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 7.7e-79 298.1 236 60.2
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.3e-78 297.4 245 62.4
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.7e-78 297.0 226 63.3
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 2.2e-78 296.6 231 61.0
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.2e-78 296.6 226 63.3
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 2.9e-78 296.2 237 60.3
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 5.0e-78 295.4 239 59.8
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 6.5e-78 295.0 230 62.6
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 6.5e-78 295.0 230 60.0
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 8.5e-78 294.7 230 62.6
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.1e-77 294.3 237 61.6
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.1e-77 294.3 231 60.6
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 1.4e-77 293.9 236 60.6
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.4e-77 293.9 229 60.7
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 1.4e-77 293.9 226 63.3
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 1.9e-77 293.5 240 59.2
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 3.2e-77 292.7 226 62.4
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 4.2e-77 292.4 230 60.0
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 4.2e-77 292.4 230 60.0
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 5.5e-77 292.0 228 61.4
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 9.4e-77 291.2 237 60.8
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 9.4e-77 291.2 230 61.3
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.6e-76 290.4 231 60.6
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 2.7e-76 289.7 228 61.0
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.6e-76 289.3 226 61.1
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 3.6e-76 289.3 226 60.2
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 4.7e-76 288.9 229 61.1
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.7e-76 288.9 226 61.1
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 7.9e-76 288.1 236 61.0
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.4e-75 287.3 240 59.2
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.4e-75 287.3 235 63.0
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.8e-75 287.0 239 59.4
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.8e-75 287.0 227 59.9
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 5.1e-75 285.4 227 59.9
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 5.7e-74 282.0 237 58.2
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.4e-72 277.3 201 68.2
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 5.3e-72 275.4 222 59.5
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.3e-70 270.8 326 45.7
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 7.2e-69 265.0 231 56.7
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.8e-67 260.4 240 53.3
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 5.0e-62 242.3 246 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 5.5e-61 238.8 228 51.3
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.6e-60 236.1 221 54.8
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.7e-60 235.7 230 50.0
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 5.2e-59 232.3 229 48.9
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 5.7e-58 228.8 130 75.4
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.7e-57 226.1 130 76.9
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 9.1e-56 221.5 136 70.6
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.5e-50 204.1 245 43.3
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 3.5e-47 193.0 177 55.4
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 1.5e-45 187.6 117 70.1
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 8.9e-43 178.3 206 42.7
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.5e-42 177.6 206 42.7
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.7e-42 175.6 206 42.7
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.7e-41 174.1 206 42.2
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.8e-35 154.1 242 37.2
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.2e-28 131.3 243 35.4
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 6.2e-28 129.0 59 93.2
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-22 111.3 75 62.7
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 4.4e-10 69.7 64 62.5


User provided reference genes

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