Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.7e-252 874.0 432 100.0
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 8.7e-246 853.2 432 97.5
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 3.3e-245 851.3 432 97.2
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 2.8e-228 795.0 433 90.5
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 6.0e-223 777.3 434 89.9
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.2e-210 736.5 407 88.9
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.4e-189 664.8 434 78.8
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 9.1e-171 604.0 432 68.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.1e-167 591.3 414 69.1
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 4.0e-166 588.6 393 71.0
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 2.6e-165 585.9 404 69.6
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.8e-164 582.4 393 71.2
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 8.3e-164 580.9 397 70.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.0e-163 577.8 405 67.4
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 3.5e-162 575.5 395 70.9
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.9e-162 574.7 393 69.2
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.3e-161 573.5 397 69.5
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 8.6e-161 570.9 397 68.8
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 1.9e-160 569.7 401 67.3
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.6e-160 568.2 394 70.1
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 9.5e-160 567.4 404 67.3
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 1.2e-159 567.0 399 68.4
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 1.2e-159 567.0 397 69.0
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.6e-159 566.6 393 67.9
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 8.9e-158 560.8 385 69.4
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.7e-156 556.6 397 68.3
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.9e-155 553.1 398 67.1
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 7.8e-154 547.7 393 67.7
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.3e-153 546.2 376 68.4
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.0e-153 545.8 421 64.1
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 1.8e-150 536.6 385 64.4
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.5e-149 533.5 399 64.2
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.9e-147 526.6 395 65.1
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 7.0e-147 524.6 393 63.6
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.6e-146 523.5 396 64.1
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.7e-146 522.7 418 59.6
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 4.6e-146 521.9 397 65.2
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.7e-145 520.0 393 62.6
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.9e-145 518.8 375 65.9
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 3.9e-145 518.8 413 59.8
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.5e-144 516.9 386 64.2
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.5e-144 516.9 399 63.4
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 9.5e-144 514.2 432 60.2
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 3.6e-143 512.3 428 59.6
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 1.8e-142 510.0 408 61.5
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 2.6e-141 506.1 399 60.7
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 9.9e-141 504.2 397 61.7
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 1.3e-140 503.8 400 62.2
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 2.9e-140 502.7 407 60.7
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-140 502.7 397 62.0
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.9e-140 501.9 402 63.7
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 7.1e-139 498.0 415 58.3
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 9.2e-139 497.7 397 62.2
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.7e-137 493.4 362 65.2
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.3e-136 489.2 397 59.2
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 3.6e-135 485.7 392 59.4
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 4.7e-135 485.3 392 59.2
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.8e-134 483.4 404 58.7
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.4e-134 483.0 392 62.2
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.8e-134 481.5 396 61.1
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 6.4e-132 474.9 388 61.3
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.1e-131 474.2 396 58.8
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.1e-131 474.2 396 58.8
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.2e-130 470.7 392 60.2
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.0e-129 467.6 396 59.3
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.0e-129 467.6 397 57.9
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.3e-129 467.2 374 62.3
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.3e-129 466.5 395 57.7
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.6e-129 464.9 370 62.2
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.1e-128 464.2 392 56.6
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.9e-128 463.4 394 57.1
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 2.8e-127 459.5 395 57.5
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 8.1e-127 458.0 357 60.8
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.4e-126 456.4 397 56.7
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.5e-125 453.8 406 58.1
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 4.4e-125 452.2 415 54.9
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.8e-125 451.8 394 58.4
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.6e-125 451.4 395 59.0
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 7.6e-125 451.4 394 58.1
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.2e-124 449.9 406 57.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.2e-124 449.9 419 53.7
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 4.9e-124 448.7 338 63.3
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.9e-123 446.8 392 54.6
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.9e-123 446.8 413 57.1
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 9.3e-123 444.5 419 53.0
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 6.0e-122 441.8 351 61.5
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 6.0e-122 441.8 397 57.9
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.1e-121 438.7 392 57.7
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.6e-120 435.3 394 57.6
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 7.3e-120 434.9 403 55.6
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-118 430.6 418 53.8
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.9e-116 422.9 407 51.8
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.9e-116 422.2 387 57.4
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 7.1e-115 418.3 408 52.0
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.6e-114 417.2 406 55.4
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.6e-114 417.2 395 51.4
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 3.5e-114 416.0 404 55.0
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.0e-114 415.2 404 54.7
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.9e-114 414.8 391 53.2
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.9e-114 414.8 418 51.0
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 6.7e-113 411.8 381 55.4
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 6.7e-113 411.8 385 55.1
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 2.5e-112 409.8 383 55.4
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.3e-112 409.1 418 51.9
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.3e-112 409.1 383 55.4
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 9.6e-112 407.9 387 54.0
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.6e-111 407.1 402 54.2
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-111 407.1 396 54.0
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 6.5e-108 395.2 390 53.3
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.9e-107 393.7 395 52.2
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.9e-107 393.7 394 51.5
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 5.5e-107 392.1 404 49.8
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.6e-106 390.6 436 49.8
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.3e-105 386.7 368 55.2
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 6.7e-105 385.2 395 52.7
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 8.7e-105 384.8 381 52.0
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.9e-104 383.6 354 53.1
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 1.9e-104 383.6 390 51.5
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.9e-104 383.6 390 49.7
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 2.5e-104 383.3 390 51.5
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 2.5e-104 383.3 390 51.5
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 5.7e-104 382.1 408 49.5
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.3e-103 380.9 408 49.5
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 2.1e-103 380.2 382 52.6
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.8e-103 379.8 390 50.5
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 3.7e-103 379.4 381 50.9
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.1e-102 377.9 367 51.0
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.4e-102 377.5 393 49.6
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.3e-100 370.9 386 50.0
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.9e-100 369.8 335 57.0
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 5.0e-100 369.0 390 47.9
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 2.5e-99 366.7 310 58.7
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.7e-98 363.2 382 47.1
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.9e-98 361.7 400 45.5
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 4.3e-96 355.9 408 46.6
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 7.4e-96 355.1 384 50.3
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 3.4e-93 346.3 380 48.2
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-92 343.2 289 60.9
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 7.2e-91 338.6 387 45.7
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 9.4e-91 338.2 431 40.6
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 4.8e-87 325.9 365 45.8
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 6.9e-86 322.0 393 45.0
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 9.1e-86 321.6 362 46.7
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.9e-83 313.9 279 58.1
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.3e-81 307.0 374 43.6
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 3.0e-81 306.6 368 44.8
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.4e-78 297.7 431 40.4
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.7e-74 283.5 380 41.6
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 2.3e-73 280.4 300 49.3
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 5.7e-72 275.8 366 40.4
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 8.8e-65 251.9 293 49.1
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 4.8e-63 246.1 232 54.7
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.8e-57 227.6 284 41.5
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.9e-55 219.5 239 50.6
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 3.3e-51 206.8 174 58.0
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 7.0e-46 189.1 181 52.5
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 2.7e-45 187.2 347 35.2
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.6e-45 186.4 173 56.6
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 7.8e-45 185.7 178 53.9
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-42 177.9 185 51.4
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 1.9e-38 164.5 133 57.9
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-37 161.4 129 58.9
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.5e-35 154.8 151 51.0
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.3e-35 153.3 305 33.1
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 3.6e-34 150.2 119 59.7
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.2e-34 149.4 202 40.6
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 3.1e-33 147.1 113 55.8
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 8.3e-31 139.0 345 30.1
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.4e-25 121.7 289 31.1
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.6e-19 99.0 72 63.9
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 1.1e-17 95.5 378 24.3
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 2.4e-17 94.4 62 67.7
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 2.6e-16 90.9 374 23.8
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.4e-08 63.5 62 54.8


User provided reference genes

Program Settings