Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 7.6e-121 437.2 221 100.0
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.1e-108 396.7 221 89.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 2.5e-108 395.6 221 89.1
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 4.6e-94 348.2 225 80.9
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 8.7e-93 344.0 225 80.0
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 2.7e-86 322.4 210 77.1
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 2.3e-85 319.3 223 74.9
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 8.8e-69 264.2 228 61.4
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 1.5e-68 263.5 227 59.9
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 2.6e-68 262.7 224 64.7
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.3e-68 262.3 227 60.4
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 2.2e-67 259.6 230 58.3
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 2.8e-67 259.2 228 60.5
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 6.3e-67 258.1 220 63.6
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 8.2e-67 257.7 229 58.5
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 7.0e-66 254.6 229 58.1
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 7.0e-66 254.6 227 58.1
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 9.1e-66 254.2 230 58.3
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.6e-65 253.4 230 58.3
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.0e-65 253.1 231 59.7
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.0e-65 253.1 231 59.7
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 3.5e-65 252.3 228 58.3
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 5.9e-65 251.5 232 58.2
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.0e-64 250.8 230 56.1
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.0e-64 250.8 230 57.8
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 3.8e-64 248.8 228 59.2
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.5e-63 246.9 228 60.1
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.5e-63 246.9 229 60.7
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.2e-63 245.4 227 57.3
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 9.4e-63 244.2 248 55.6
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 1.6e-62 243.4 227 59.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 1.6e-62 243.4 228 57.5
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 3.6e-62 242.3 228 55.3
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 4.7e-62 241.9 228 57.0
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.0e-61 240.7 225 56.9
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.8e-61 240.0 229 55.0
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 4.0e-61 238.8 233 52.8
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 8.8e-61 237.7 235 56.2
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 2.6e-60 236.1 232 56.0
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 5.7e-60 235.0 226 57.1
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 5.7e-60 235.0 227 56.4
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 7.5e-60 234.6 230 57.4
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.3e-59 233.8 222 55.0
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 6.3e-59 231.5 227 55.9
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.8e-58 229.9 222 53.2
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.1e-58 229.2 239 53.6
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 4.1e-58 228.8 237 53.6
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.2e-57 227.3 232 58.2
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.2e-57 227.3 150 74.7
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.0e-57 226.5 232 53.4
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.0e-57 226.5 228 56.1
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 5.9e-57 224.9 231 54.5
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 7.7e-57 224.6 232 53.0
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.3e-56 223.8 241 49.8
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.3e-56 223.8 237 52.7
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 2.2e-56 223.0 237 52.7
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.9e-56 222.6 239 52.3
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 2.9e-56 222.6 228 55.3
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.1e-55 220.7 235 51.5
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.1e-55 220.7 244 52.0
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.9e-55 219.9 236 53.4
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.9e-55 219.9 211 56.4
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 2.5e-55 219.5 237 54.4
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 3.2e-55 219.2 234 52.6
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 3.2e-55 219.2 184 61.4
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 4.2e-55 218.8 192 59.4
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 5.5e-55 218.4 227 52.9
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 5.5e-55 218.4 227 52.9
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 7.2e-55 218.0 258 49.6
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 7.2e-55 218.0 239 50.2
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 9.4e-55 217.6 217 55.3
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 2.1e-54 216.5 158 67.7
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.1e-54 216.5 246 51.6
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 2.7e-54 216.1 222 52.3
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.7e-54 216.1 225 56.4
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 3.6e-54 215.7 229 51.1
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 4.7e-54 215.3 237 52.3
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 4.7e-54 215.3 245 51.0
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 6.1e-54 214.9 235 54.0
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.0e-53 214.2 247 51.4
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.0e-53 214.2 238 52.5
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.4e-53 213.8 243 51.0
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.4e-53 213.8 225 51.1
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 1.4e-53 213.8 229 50.2
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 1.8e-53 213.4 192 57.3
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.8e-53 213.4 252 50.4
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 3.0e-53 212.6 226 54.0
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 4.0e-53 212.2 241 50.6
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 4.0e-53 212.2 223 57.0
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 5.2e-53 211.8 233 51.1
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 5.2e-53 211.8 239 50.6
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 8.8e-53 211.1 233 55.8
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.2e-52 210.7 226 52.2
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 1.2e-52 210.7 236 52.1
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 3.7e-51 205.7 222 51.8
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 3.7e-51 205.7 222 51.8
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 4.8e-51 205.3 234 51.7
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 4.8e-51 205.3 230 51.7
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 8.3e-51 204.5 223 50.7
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 1.8e-50 203.4 235 50.2
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 4.1e-50 202.2 234 49.6
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 5.4e-50 201.8 227 49.8
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 1.2e-49 200.7 193 57.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.0e-49 199.9 222 48.6
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 5.9e-49 198.4 228 49.6
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.0e-48 197.6 227 55.5
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 1.7e-48 196.8 243 46.1
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 2.9e-48 196.1 209 52.2
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 1.9e-47 193.4 184 57.1
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 7.2e-47 191.4 226 46.0
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.2e-46 190.7 223 47.1
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.2e-46 190.7 232 49.6
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 2.1e-46 189.9 151 63.6
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 3.6e-46 189.1 193 54.4
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 6.1e-46 188.3 232 50.4
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.4e-45 187.2 232 50.4
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.4e-45 187.2 204 51.0
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.4e-45 187.2 186 54.8
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.8e-45 186.8 186 54.8
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 2.3e-45 186.4 228 47.4
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 2.3e-45 186.4 229 46.3
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 5.2e-45 185.3 236 48.7
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.2e-45 185.3 221 49.3
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.2e-44 184.1 250 45.2
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 5.7e-44 181.8 229 46.3
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 4.9e-43 178.7 230 46.1
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.4e-42 177.2 213 46.9
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 7.0e-42 174.9 256 44.1
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 4.5e-41 172.2 145 60.7
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 1.3e-40 170.6 132 62.9
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.3e-40 170.6 138 65.2
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 2.9e-40 169.5 256 43.0
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 4.3e-39 165.6 165 53.3
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.0e-37 161.0 221 43.9
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.0e-37 161.0 142 58.5
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.4e-34 150.6 144 54.9
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.4e-34 150.6 172 51.2
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.6e-31 138.7 186 45.7
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 4.7e-30 135.6 128 52.3
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.4e-26 124.0 186 40.9
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 3.5e-25 119.4 207 37.7
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 5.0e-24 115.5 70 78.6
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 5.2e-21 105.5 77 64.9
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 2.0e-20 103.6 173 41.6
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.6e-20 103.2 132 48.5
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 9.8e-20 101.3 58 77.6
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.5e-17 92.8 57 73.7
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 4.6e-17 92.4 142 43.7
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.0e-16 91.3 56 71.4
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 5.1e-16 89.0 185 38.4
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 4.7e-14 82.4 85 51.8
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 7.6e-12 75.1 64 54.7
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.4e-10 68.9 50 62.0
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.6e-09 67.4 53 62.3
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 2.3e-08 63.5 97 42.3
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.0e-08 63.2 50 58.0
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.8e-06 56.6 47 53.2
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 4.7e-06 55.8 76 43.4


User provided reference genes

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