Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 5.3e-226 787.3 395 100.0
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 9.2e-194 680.2 395 88.6
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 2.7e-193 678.7 395 88.4
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 1.5e-172 609.8 399 79.9
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 4.0e-165 585.1 396 78.3
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 2.0e-140 503.1 397 71.3
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 9.3e-138 494.2 396 68.9
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 2.5e-130 469.5 394 62.7
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.4e-128 463.8 405 61.5
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 2.3e-128 463.0 372 65.1
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 8.8e-128 461.1 342 69.6
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.1e-127 460.7 339 69.6
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 7.4e-127 458.0 395 63.3
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 1.3e-126 457.2 399 61.7
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 8.2e-126 454.5 394 60.7
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 1.8e-125 453.4 397 62.2
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 1.8e-125 453.4 390 63.3
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 4.1e-125 452.2 402 61.7
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 4.1e-125 452.2 394 62.2
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 4.1e-125 452.2 400 60.8
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.1e-125 452.2 400 60.2
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 1.2e-124 450.7 393 61.3
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 3.4e-124 449.1 400 60.2
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 4.5e-124 448.7 393 60.3
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 2.2e-123 446.4 348 65.2
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 2.2e-123 446.4 392 61.2
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 2.9e-123 446.0 399 60.2
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 8.5e-123 444.5 395 60.5
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 1.4e-122 443.7 402 61.2
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 1.4e-122 443.7 408 60.0
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 1.4e-122 443.7 393 61.3
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 2.5e-122 443.0 339 66.7
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 9.4e-122 441.0 403 60.5
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 9.4e-122 441.0 390 60.5
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 9.4e-122 441.0 346 63.9
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 9.4e-122 441.0 347 64.3
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 3.6e-121 439.1 399 59.6
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 4.7e-121 438.7 399 59.4
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 4.7e-121 438.7 336 67.6
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 7.9e-121 438.0 393 59.8
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.0e-120 437.6 399 59.1
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 6.7e-120 434.9 379 59.9
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 8.8e-120 434.5 340 65.6
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.1e-119 434.1 391 60.6
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 2.0e-119 433.3 393 59.8
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 3.3e-119 432.6 405 59.0
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 5.7e-119 431.8 392 60.5
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 2.2e-118 429.9 397 58.9
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 3.7e-118 429.1 393 61.1
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 1.1e-117 427.6 392 59.4
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 1.8e-117 426.8 401 58.6
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 5.3e-117 425.2 394 60.2
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 7.0e-117 424.9 395 60.0
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.2e-116 424.1 388 58.5
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 1.2e-116 424.1 388 58.5
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 3.4e-116 422.5 352 62.2
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 3.4e-116 422.5 361 60.9
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 3.4e-116 422.5 337 64.7
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 4.5e-116 422.2 394 59.4
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 7.7e-116 421.4 323 67.8
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.0e-115 421.0 388 60.1
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 1.3e-115 420.6 397 57.7
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 1.3e-115 420.6 343 64.1
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 2.2e-115 419.9 341 62.5
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 2.9e-115 419.5 337 62.6
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 2.9e-115 419.5 342 61.4
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 2.9e-115 419.5 345 62.9
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 3.8e-115 419.1 347 60.8
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 8.5e-115 417.9 422 54.3
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.1e-114 417.5 342 61.1
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 1.1e-114 417.5 391 58.1
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 1.9e-114 416.8 351 61.5
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 2.5e-114 416.4 359 59.3
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 3.2e-114 416.0 444 53.4
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 4.2e-114 415.6 395 58.7
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 7.2e-114 414.8 394 56.3
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 6.1e-113 411.8 350 61.7
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 6.1e-113 411.8 397 56.9
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.0e-112 411.0 389 56.6
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 3.0e-112 409.5 427 53.4
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 3.9e-112 409.1 373 59.0
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 6.7e-112 408.3 320 64.1
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 1.5e-111 407.1 402 57.2
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 3.3e-111 406.0 323 65.0
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 2.8e-110 402.9 338 60.9
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.0e-107 394.4 325 64.3
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 1.0e-107 394.4 340 59.4
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 1.3e-107 394.0 282 69.1
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 7.2e-106 388.3 339 59.3
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 3.0e-104 382.9 315 59.0
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 8.2e-102 374.8 356 55.3
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 4.5e-100 369.0 298 61.1
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 1.2e-95 354.4 333 59.8
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 4.8e-94 349.0 321 58.6
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 4.1e-93 345.9 278 62.6
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 8.3e-86 321.6 315 54.9
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 1.6e-84 317.4 334 51.5
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 4.3e-82 309.3 334 50.6
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 7.5e-79 298.5 339 45.4
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 9.8e-79 298.1 338 48.8
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 1.7e-78 297.4 354 49.4
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 3.9e-75 286.2 376 47.3
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 5.6e-74 282.3 395 46.6
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 2.6e-71 273.5 315 47.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 2.3e-67 260.4 359 42.9
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 3.4e-63 246.5 361 43.8
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 4.9e-62 242.7 244 55.7
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.1e-61 241.5 274 51.1
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 9.9e-55 218.4 203 59.1
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 2.2e-54 217.2 244 51.2
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 5.4e-53 212.6 205 59.0
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 1.3e-46 191.4 393 35.6
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 2.1e-41 174.1 121 71.9
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 6.2e-41 172.6 377 32.6
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 5.8e-39 166.0 264 41.7
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 7.6e-39 165.6 232 44.8
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 3.2e-37 160.2 217 44.7
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 7.9e-28 129.0 78 78.2
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 2.6e-15 87.4 59 69.5
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 3.6e-12 77.0 45 77.8
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.8e-11 74.7 103 41.7
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 6.7e-11 72.8 51 76.5
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 2.5e-10 70.9 46 65.2
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 7.4e-10 69.3 74 52.7
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 9.7e-10 68.9 98 39.8
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.0e-07 61.2 72 55.6
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 2.0e-07 61.2 51 66.7


User provided reference genes

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