Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008265 Solanum tuberosum HOM05D000245 ORTHO05D000020 5.0e-51 204.1 102 100.0
PGSC0003DMG400008248 Solanum tuberosum HOM05D000245 ORTHO05D000020 7.7e-44 180.3 95 94.7
Solyc10g050970.1 Solanum lycopersicum HOM05D000245 ORTHO05D000020 1.4e-37 159.5 97 87.6
Sopen10g022610 Solanum pennellii HOM05D000245 ORTHO05D000020 2.0e-31 139.0 110 70.9
Nitab4.5_0001361g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 2.1e-25 119.0 108 66.7
Nitab4.5_0000876g0060 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.8e-24 115.9 108 63.9
Nitab4.5_0001361g0060 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.7e-22 109.4 106 62.3
Nitab4.5_0000876g0070 Nicotiana tabacum HOM05D000245 ORTHO05D000020 4.9e-22 107.8 109 63.3
PGSC0003DMG400008264 Solanum tuberosum HOM05D000245 ORTHO05D000020 2.5e-18 95.5 94 60.6
Peaxi162Scf00003g01526 Petunia axillaris HOM05D000245 ORTHO05D000020 5.6e-18 94.4 101 58.4
Nitab4.5_0005249g0050 Nicotiana tabacum HOM05D000245 ORTHO05D000020 8.0e-17 90.5 96 59.4
Nitab4.5_0002097g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 3.0e-16 88.6 96 58.3
Nitab4.5_0000435g0080 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.5e-15 86.3 102 54.9
Solyc01g108240.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 2.4e-13 79.0 104 53.8
Sopen01g050460 Solanum pennellii HOM05D000245 ORTHO05D000020 2.4e-13 79.0 104 53.8
PGSC0003DMG400025797 Solanum tuberosum HOM05D000245 ORTHO05D000020 2.4e-13 79.0 104 53.8
Peaxi162Scf00016g00183 Petunia axillaris HOM05D000245 ORTHO05D000020 3.2e-13 78.6 104 52.9
Nitab4.5_0004666g0020 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.6e-12 76.3 91 53.8
Peaxi162Scf00152g00009 Petunia axillaris HOM05D000245 ORTHO05D000020 1.6e-12 76.3 86 55.8
DCAR_022022 Daucus carota HOM05D000245 ORTHO05D000020 1.7e-11 72.8 114 45.6
Nitab4.5_0001154g0040 Nicotiana tabacum HOM05D000245 ORTHO05D000020 6.6e-11 70.9 51 72.5
Nitab4.5_0002623g0030 Nicotiana tabacum HOM05D000245 ORTHO05D000020 8.6e-11 70.5 49 75.5
MSTRG.20155 Avicennia marina HOM05D000245 ORTHO05D000020 1.9e-10 69.3 114 45.6
Nitab4.5_0000876g0080 Nicotiana tabacum HOM05D000245 ORTHO05D000020 3.3e-10 68.6 59 62.7
Sopen10g022600 Solanum pennellii HOM05D000245 ORTHO05D000020 1.6e-09 66.2 36 86.1
Dinv42157 Davidia involucrata HOM05D000245 ORTHO05D000020 3.6e-09 65.1 104 44.2
CAN.G332.7 Capsicum annuum HOM05D000245 ORTHO05D000020 1.4e-08 63.2 68 52.9
Glyma.07G212400 Glycine max HOM05D000245 ORTHO05D000020 2.3e-08 62.4 97 43.3
CAN.G1041.13 Capsicum annuum HOM05D000245 ORTHO05D000020 3.1e-08 62.0 100 47.0
Dinv23620 Davidia involucrata HOM05D000245 ORTHO05D000020 4.0e-08 61.6 103 43.7
Lj4g0003208 Lotus japonicus HOM05D000245 ORTHO05D000020 4.0e-08 61.6 99 45.5
Oeu007288.1 Olea europaea HOM05D000245 ORTHO05D000020 8.9e-08 60.5 107 41.1
VMungo0251G2704 Vigna mungo HOM05D000245 ORTHO05D000020 1.5e-07 59.7 98 41.8
Haze_10078 Corylus avellana HOM05D000245 ORTHO05D000020 2.0e-07 59.3 90 42.2
SalBow6G4653 Salvia bowleyana HOM05D000245 ORTHO05D000020 2.6e-07 58.9 31 87.1
C07p60580 Brassica napus HOM05D000245 ORTHO05D000020 3.4e-07 58.5 94 41.5
Cpa.g.sc62.11 Carica papaya HOM05D000245 ORTHO05D000020 3.4e-07 58.5 67 50.7
QL11p035934 Quercus lobata HOM05D000245 ORTHO05D000020 3.4e-07 58.5 74 45.9
SGA_v2.0_scaffold90G27657 Striga asiatica HOM05D000245 ORTHO05D000020 4.4e-07 58.2 28 96.4
Haze_10079 Corylus avellana HOM05D000245 ORTHO05D000020 5.8e-07 57.8 90 41.1
HanXRQChr03g0071951 Helianthus annuus HOM05D000245 ORTHO05D000020 5.8e-07 57.8 28 96.4
PSO675G2858 Papaver somniferum HOM05D000245 ORTHO05D000020 7.5e-07 57.4 46 60.9
FAN24G1430 Fragaria x ananassa HOM05D000245 ORTHO05D000020 9.8e-07 57.0 116 40.5
A03p62900 Brassica napus HOM05D000245 ORTHO05D000020 1.3e-06 56.6 94 41.5
TWI31G0072 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 1.3e-06 56.6 91 46.2
BcaNung05027 Brassica carinata HOM05D000245 ORTHO05D000020 1.7e-06 56.2 31 83.9
C01p04350 Brassica napus HOM05D000245 ORTHO05D000020 1.7e-06 56.2 31 83.9
C01p04380 Brassica napus HOM05D000245 ORTHO05D000020 1.7e-06 56.2 31 83.9
BraA01t00391Z Brassica rapa HOM05D000245 ORTHO05D000020 1.7e-06 56.2 31 83.9
Migut.B00347 Erythranthe guttata HOM05D000245 ORTHO05D000020 1.7e-06 56.2 31 80.6
FvH4_2g06060 Fragaria vesca HOM05D000245 ORTHO05D000020 1.7e-06 56.2 116 40.5
FAN15G0061 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.7e-06 56.2 116 40.5
FAN20G0248 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.7e-06 56.2 116 40.5
FAN27G3315 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.7e-06 56.2 116 40.5
Aa31LG2G16320 Aethionema arabicum HOM05D000245 ORTHO05D000020 2.2e-06 55.8 38 71.1
PSO541G5599 Papaver somniferum HOM05D000245 ORTHO05D000020 2.2e-06 55.8 73 43.8
RcHm_v2.0_Chr6g0257181 Rosa chinensis HOM05D000245 ORTHO05D000020 2.2e-06 55.8 113 42.5
AT4G34410 Arabidopsis thaliana HOM05D000245 ORTHO05D000020 3.7e-06 55.1 31 83.9
BcaNung06977 Brassica carinata HOM05D000245 ORTHO05D000020 3.7e-06 55.1 31 83.9
BolC1t00424H Brassica oleracea HOM05D000245 ORTHO05D000020 3.7e-06 55.1 31 80.6
Carub.0007s0591 Capsella rubella HOM05D000245 ORTHO05D000020 3.7e-06 55.1 31 83.9
Thhalv10027524m.g Eutrema salsugineum HOM05D000245 ORTHO05D000020 3.7e-06 55.1 31 83.9
PGR042G0553 Punica granatum HOM05D000245 ORTHO05D000020 3.7e-06 55.1 101 40.6
DCAR_029052 Daucus carota HOM05D000245 ORTHO05D000020 4.9e-06 54.7 28 89.3
TAR628G1358 Trochodendron aralioides HOM05D000245 ORTHO05D000020 4.9e-06 54.7 83 42.2
HanXRQChr09g0250411 Helianthus annuus HOM05D000245 ORTHO05D000020 6.4e-06 54.3 101 41.6
Lsat_1_v5_gn_9_110040 Lactuca sativa HOM05D000245 ORTHO05D000020 6.4e-06 54.3 60 53.3
MD10G1094700 Malus domestica HOM05D000245 ORTHO05D000020 6.4e-06 54.3 99 40.4
Potri.004G141200 Populus trichocarpa HOM05D000245 ORTHO05D000020 6.4e-06 54.3 96 41.7
Prupe.8G125100 Prunus persica HOM05D000245 ORTHO05D000020 6.4e-06 54.3 110 39.1
PGR142G1803 Punica granatum HOM05D000245 ORTHO05D000020 6.4e-06 54.3 34 70.6
Glyma.02G132500 Glycine max HOM05D000245 ORTHO05D000020 8.3e-06 53.9 97 40.2
Lj5P209T52 Lonicera japonica HOM05D000245 ORTHO05D000020 8.3e-06 53.9 26 96.2
Rhsim05G0084300 Rhododendron simsii HOM05D000245 ORTHO05D000020 8.3e-06 53.9 38 65.8
TAR376G0827 Trochodendron aralioides HOM05D000245 ORTHO05D000020 8.3e-06 53.9 76 44.7


User provided reference genes

Program Settings