Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.8e-156 555.8 265 100.0
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 5.5e-150 534.3 265 95.5
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.8e-148 529.3 265 94.7
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.7e-143 512.7 265 90.9
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 3.8e-143 511.5 265 90.6
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.4e-137 492.3 265 86.4
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.0e-135 486.9 263 86.7
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.9e-134 482.6 265 85.7
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.7e-131 471.1 249 88.4
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.2e-127 459.1 267 80.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.0e-115 419.5 265 78.5
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 8.8e-108 394.0 201 93.0
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 4.2e-102 375.2 309 63.4
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 4.7e-93 345.1 256 66.8
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 5.7e-91 338.2 265 60.8
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.1e-89 332.4 265 60.4
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 2.7e-88 329.3 265 60.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 4.5e-88 328.6 265 57.7
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.0e-87 327.4 266 60.5
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 6.1e-85 318.2 254 59.1
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.9e-84 314.3 265 58.5
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.0e-83 313.2 255 59.2
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.2e-80 303.9 263 56.3
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.8e-80 301.2 254 57.1
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.7e-79 300.1 255 57.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.9e-79 298.9 269 54.3
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 8.6e-79 297.7 265 54.7
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 5.6e-78 295.0 265 54.3
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.3e-76 289.7 269 52.8
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 5.2e-76 288.5 267 53.2
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.4e-75 285.8 265 55.1
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 7.5e-75 284.6 265 53.6
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 9.8e-75 284.3 263 52.5
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.3e-74 283.9 270 51.9
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 7.0e-73 278.1 267 53.2
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 9.2e-73 277.7 272 54.0
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.5e-72 275.8 253 54.2
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.6e-72 275.4 266 52.6
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.6e-72 275.4 267 54.3
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 7.8e-72 274.6 267 54.7
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 7.8e-72 274.6 272 53.3
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.0e-71 274.2 268 52.2
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.3e-71 273.1 253 54.5
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.1e-71 271.9 264 51.1
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.1e-70 270.8 270 52.2
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.9e-70 270.0 273 51.6
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.9e-70 270.0 266 51.5
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.2e-69 267.3 265 49.8
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.1e-68 264.2 263 50.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 6.8e-68 261.5 225 54.7
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.6e-67 259.6 264 48.1
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 5.8e-67 258.5 269 49.1
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 5.8e-67 258.5 267 52.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 7.5e-67 258.1 269 48.7
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 9.9e-67 257.7 257 50.2
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.7e-66 256.9 253 52.6
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 6.4e-66 255.0 267 52.1
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.4e-65 253.8 237 52.3
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.4e-65 253.1 267 49.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 5.4e-65 251.9 268 45.9
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 9.2e-65 251.1 261 51.3
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.2e-64 250.8 255 51.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.1e-64 250.0 237 51.5
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.3e-63 247.3 251 51.0
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.3e-63 246.5 219 53.4
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.0e-63 246.1 251 51.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 3.9e-63 245.7 266 48.1
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.9e-63 245.7 265 46.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 5.1e-63 245.4 269 49.8
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-62 244.2 189 61.4
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.1e-62 244.2 251 48.6
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 3.3e-62 242.7 268 49.3
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.3e-62 242.7 270 46.3
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 3.3e-62 242.7 240 50.4
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.3e-62 242.3 268 50.0
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 5.6e-62 241.9 267 49.8
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 9.5e-62 241.1 262 47.3
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.2e-61 240.7 247 50.6
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.6e-61 240.4 265 44.9
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.1e-61 240.0 265 47.5
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.6e-61 239.2 265 47.9
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 4.7e-61 238.8 271 47.2
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 6.2e-61 238.4 265 44.5
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 6.2e-61 238.4 265 44.5
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 6.2e-61 238.4 265 44.5
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.1e-60 237.7 199 57.3
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.1e-60 237.7 271 48.0
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.4e-60 237.3 266 45.9
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 3.1e-60 236.1 266 44.7
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.0e-60 235.7 271 45.4
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 3.4e-59 232.6 254 46.9
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 3.4e-59 232.6 212 56.1
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.4e-59 232.3 258 47.3
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.4e-59 232.3 244 47.5
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 5.8e-59 231.9 266 44.7
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 5.8e-59 231.9 256 46.9
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.6e-59 231.5 267 44.9
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 9.9e-59 231.1 229 49.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.2e-58 229.9 266 43.6
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.1e-57 227.6 252 47.2
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.4e-57 226.5 253 47.8
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.4e-57 226.5 214 52.8
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.2e-57 226.1 249 47.0
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 3.2e-57 226.1 275 44.7
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 4.2e-57 225.7 253 45.1
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 4.2e-57 225.7 287 42.2
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 5.4e-57 225.3 258 46.1
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 7.1e-57 224.9 314 41.7
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 7.1e-57 224.9 237 48.9
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 7.1e-57 224.9 211 49.3
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.1e-56 223.4 263 45.6
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.5e-56 222.6 274 45.3
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 6.0e-56 221.9 267 41.9
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 6.0e-56 221.9 267 41.9
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.1e-55 218.8 273 43.2
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 5.1e-55 218.8 253 43.9
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 8.7e-55 218.0 267 41.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 8.7e-55 218.0 267 41.9
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.1e-54 217.6 194 60.8
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 7.3e-54 214.9 271 44.3
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 9.6e-54 214.5 219 47.0
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.1e-53 213.4 270 43.0
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 6.2e-53 211.8 214 48.1
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.4e-52 209.9 228 47.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.1e-52 209.5 211 47.9
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.4e-51 206.1 210 48.1
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 4.4e-51 205.7 274 45.3
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.9e-50 203.0 273 45.1
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 6.4e-50 201.8 288 39.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 8.4e-50 201.4 265 44.9
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-49 200.3 255 45.5
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-49 200.3 268 43.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.4e-49 199.9 265 44.9
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 3.2e-49 199.5 265 44.2
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 7.1e-49 198.4 214 45.8
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.7e-48 196.4 288 39.2
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 3.0e-47 193.0 241 44.0
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.9e-47 192.6 224 45.1
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.1e-46 191.0 290 38.6
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.9e-46 190.3 171 53.8
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 5.6e-46 188.7 272 37.5
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 2.1e-45 186.8 178 51.1
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.1e-44 184.5 180 51.1
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 9.0e-44 181.4 85 96.5
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 5.8e-43 178.7 274 38.3
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.9e-41 173.7 221 43.0
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.2e-41 172.6 87 92.0
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 9.3e-41 171.4 163 49.1
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.0e-40 168.7 284 35.2
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.1e-39 165.6 265 38.9
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.5e-38 164.1 245 40.4
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 7.4e-38 161.8 302 32.1
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 6.2e-37 158.7 235 40.0
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.1e-36 156.4 221 37.6
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.2e-35 154.5 189 41.8
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 3.8e-34 149.4 239 38.5
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 4.9e-34 149.1 139 56.1
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 8.4e-34 148.3 153 48.4
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 3.2e-33 146.4 165 42.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.9e-31 139.4 131 51.9
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 6.7e-31 138.7 318 28.6
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 6.7e-31 138.7 242 37.6
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.5e-30 137.5 179 42.5
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 7.4e-30 135.2 227 37.9
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.3e-29 134.4 225 34.7
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.6e-27 126.7 121 53.7
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 7.6e-27 125.2 231 39.4
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.2e-24 117.9 228 32.9
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 2.7e-24 116.7 135 48.9
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.5e-24 116.3 81 66.7
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 4.6e-24 115.9 265 29.1
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.1e-22 111.3 264 28.8
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-21 107.5 173 37.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.1e-20 102.8 265 30.2
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 3.0e-15 86.7 102 41.2
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 3.3e-14 83.2 93 41.9
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-13 79.7 148 32.4
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 6.3e-13 79.0 78 52.6
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 6.9e-12 75.5 47 74.5
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.5e-11 74.3 110 40.9
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 2.2e-10 70.5 86 45.3
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 1.8e-07 60.8 43 55.8
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.3e-07 60.5 45 60.0
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.0e-07 60.1 61 49.2


User provided reference genes

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